     40    462

Escherichia_coli                ATG AGG ATC ATC GAT AAC TTA GAA CAG TTC CGC CAG ATT TAC GCC TCT GGC AAG AAG TGG CAA CGC TGC GTT GAA GCG ATT GAA AAT ATC GAC AAC ATT CAG CCT GGC GTC GCC CAC TCC ATC GGT GAC TCA TTG ACT TAC CGC GTG GAG ACA GAC TCC GCG --- ACC GAT GCG CTA TTT ACC GGG CAT CGA CGC TAT TTT GAA GTG CAT TAC TAC CTG CAA GGG CAG CAA AAA ATT GAA TAT GCG CCG AAA GAG ACA TTA CAG GTA GTG GAA TAT TAT CGT GAT GAA ACT GAC CGT GAA TAT TTA AAA GGC TGC --- GGA GAA ACC GTT GAG GTC CAC GAA GGG CAA ATC GTT ATT TGC GAT ATC CAT GAA GCG TAT CGG TTT ATC TGC AAT AAC GCG GTC --- --- AAA AAA GTG GTT CTC AAA GTC ACC ATC GAA GAT GGT TAT TTC CAT AAC ??? ??? 
Citrobacter_amalonaticus        ATG AGG ATC ATC GAC AAC TTA GCG CAG TTC CAA CAA ATT TAC GCA TCC GGG AAG AAG TGG CAG CGC TGC GTC GAA GCG ATT GAA AAT ATT GAC AAT ATT CAA CCA GGT GTC GCC CAC TCT ATC GGT GAT TCC CTG AGC TAT CGC GTG GAG ACA GAC TCC GCG --- ACC GAT GCA CTG TTT ACC GGT CAT CGT CGT TAT TTT GAA ATC CAT TAC TAC CTG CAA GGA CAG CAA AAA ATA GAG TAT GCC GCC AAA GAG GAT CTC CAG GTG ATT GAA TAT TAT CGC GAT GAA ACC GAT CGC GAA TAT CTG AAA GGC TGT --- GGA AAA ACC GTA GAA GTG CGC GAA GGA CAA ATG GTT ATT TGT GAC AAC CAT GAA GCC TAT CGT TTT ATT TGT AAT AAC GCA GTG --- --- AAG AAA GTC GTA CTC AAA GTC ACC ATC GAA GAT GGT TAT TTT CAT AAT ??? ??? 
Citrobacter_braakii             ATG AGG ATC ATC GAC AAC TTA GCG CAG TTC CAA CAA ATT TAC GCA TCC GGG AAG AAG TGG CAG CGC TGC GTC GAA GCG ATT GAA AAT ATT GAT AAT ATT CAA CCA GGC GTC GCC CAC TCT ATC GGT GAT TCC CTG AGC TAT CGC GTG GAG GCA GAC TCC GCG --- ACC GAT GCG CTG TTT ACC GGT CAT CGT CGT TAT TTT GAG ATC CAT TAC TAC CTG CAA GGA CAG CAA AAA ATA GAG TAT GCC GCC AAA GAG GAT CTC CAG GTG GTT GAA TAT TAT CGC GAT GAA ACC GAT CGC GAA TAT CTG AAA GGC TGT --- GGA AAA ACC GTA GAA GTG CGC GAA GGA CAA ATG GTT ATT TGT GAC AAC CAT GAA GCC TAT CGT TTT ATT TGT AAT AAC GCA GTG --- --- AAA AAA GTC GTA CTC AAA GTC ACC ATC GAA GAT GGT TAT TTT CAT AAT ??? ??? 
Citrobacter_freundii            ATG AGG ATC ATC GAC AAC TTA GAG CAG TTC CAG CAA CGC TAT GCT TCG GGT CGG AAA TGG CAA CGC TGC GTC GAG GCT ATT GAA AAT ATT GAC AAT ATT CAG CCA GGC GTC GCC CAC TCG ATC GGT GAT TCC CTA AGC TAC CGC GTG GAA ACA GAC TCC GCG --- ACC GAT GCG CTG TTT ACC GGC CAT CGT CGT TAT TTT GAG ATC CAT TAC TAC CTG CAA GGA CAG CAA AAA ATA GAG TAT GCC GCC AAA GAG GAT CTC CAG GTG GTT GAA TTC TAT CGC GAT GAA ACC GAT CGC GAA TAT CTG AAA GGT TGT --- GGA AAA ACC GTA GAA GTG CAC GAA GGA CAA ATG GTT ATT TGT GAC AAC CAT GAG GCC TAT CGT TTT ATT TGT AAT AAC GCA GTG --- --- AAA AAA GTC GTA CTC AAA GTC ACC ATC GAA GAT GGT TAT TTT CAT AAT ??? ??? 
Citrobacter_koseri              ATG AGG CTC CTC GAT AAC TTA GAA CAG TTC CGG CAG GTC TAC GCC TCT GGT CGA AAA TGG CAG CGC TGC ATT GAA GCG ATT GAA AAT ATC GAC AAC ATT CAG CCC GGC GTC GCT CAC TCC ATC GGG GAT TCT CTG ACG TAT CGC GTG GAA ACC GAC TCT GCC --- GCC GAT GCA CTG TTT ACC GGG CAT CGC CGT TAC GTT GAA GTG CAT TAC TAC CTG CAA GGG CGA CAA AAA ATT GAA TAT GCC GCC AAA GAT ACG TTG CAG GTC GTT GAA TAT TAT CGC GAT GAA ACC GAT CGC GAA TAT CTG AAA GGT TGC --- GGA AAC ACC GTG GAG GTT CAC GAA GGA CAG ATG GTG ATT TGC GAC AAC CAT GAA GCC TAC CGT TTT ATC TGT AAT CAC GCT GTA --- --- AAA AAA GTC GTA CTC AAA GTG ACC ATT GAA GAT GGT TAT TTT CAT AAC ??? ??? 
Klebsiella_oxytoca              ATG AGA ATT CTC GAT AAT TTA GAA CAA TTT AGG CAA ATT TAT CAC AGT GGA CGT AAA TGG CAG CGC TGC ATA GAA GCT ATC AAT AAT GTC GAT AAT ATC CGG CCT GGA GTT GCC CAC TCG ATA GGC GAT TCG CTC TCC TAT CGC GTG GCA AGC GAC AGC ACC --- ACG GAT GCG CTG TTC GTT GGC AAC CGC CGC TAT TTC GAG GTG CAT TAC TAC CTC CAG GGT CAG CAA AAA ATT GAG TTT GCC GCT AAA GAG CAG CTG CAG ACC GTC GCC TGC TAT CGC GAT GAA ACT GAC CGT GAA TAT TTG AAA GGC ATT --- GGT GAA ACC GTG CAG GTC CAT GAA GGA CAA ATG GTG ATT TGC GAT ACC CAC GAA GCT TAT CGC TTT ATC TGT GAC TCG CCG GTC --- --- AAA AAG GTG GTG CTC AGA GTG ACT ATC GAA GAC GGC TAC TTC CTG AAT ??? ??? 
Yokenella_regensburgei          ATG AGA ATC ATC GAT AAC CTG GAG CAG TTC CGC GAA CGC TAT CCT TCC GGG CGG AAG TGG CAG CGC TGT ATT GAA GCG ATT GAG AAC ATC GAC AAC ATC CAG CCC GGC GTG GCG CAT TCG ATT GGT GAT TCA CTG GCC TAT CGC GTC ACC ACG GAC ACC ACC --- ACC GAC GCG CTG TTC GTC GGT CAT CGC CGC TAC TTC GAG GTG CAT TAC TAC CTG CAG GGC GCG CAA AAA ATT GAA GTG GCG GAG AAA AGC CAG CTG CAG GAG GTG GAG TGC TAC CGC GAC GAA ACC GAT CGT GAA TAC CTG AAG GGC TGC --- GGA GAC ACC GTG CAG GTG CAC GAA GGC CAG ATG GTG ATT TGT GAT ATC GAT GAG GCT TAC CGC TTC ATC AGC GAT ACC CCA GTA --- --- AAA AAA GTC GTA CTC AAA GTG ACC ATC GAA GAC GGT TAC TTC CAT AAC ??? ??? 
Enterobacter_aerogenes          ATG AGA ATT CTC GAT AAT TTA GAA CAG TTT AAT CAG GTT TAT CAT AGC GGC CGC AAA TGG CAG CGC TGC GTG GAA GCC ATC AAT AAC ATC GAC AAC ATC CGC CCG GGC GTG GCG CAT TCC ATT GGC GAT TCG CTC TCC TAT CGG GTG GAA ACC GAT AGT ACG --- ACC GAT GCG CTA TTT GTC GGT AAC CGC CGC TAC TTT GAG GTG CAC TAT TAC CTG CAA GGG CAG CAG AAA ATC GAG TTT GCC GCC AAA GAA AAT CTG CAA ACC GTG GCC TGC TAC CGC GAC GAA ACC GAT CGC GAG TAC CTG AAA GGG ATC --- GGT GAA ACG GTG AAG GTT CAC GAA GGG CAG ATG GTG ATT TGC GAT ATC GAC GAA GCC TAC CGC TTT ATC TGC GAT GCG CCG GTA --- --- AAA AAA GTG GTG CTG CGA GTC ACG GTT GAA GAC GGA TAC TTC CTC AAT ??? ??? 
Klebsiella_pneumoniae           ATG AGA ATT CTC GAT AAT TTA GAA CAG TTT AAG CAG GTT TAT CAT AGC GGC CGC AAA TGG CAG CGC TGC GTG GAA GCC ATC AAT AAC ATC GAC AAC ATC CGC CCG GGC GTG GCG CAT TCC ATT GGC GAT TCG CTC TCC TAT CGG GTG GAA ACC GAT AGT ACG --- ACC GAT GCG CTA TTT GTC GGC AAC CGC CGC TAC TTT GAG GTG CAC TAT TAC CTG CAG GGG CAG CAG AAA ATC GAG TTT GCC GTC AAA GAA AAT CTG CAA ACC GTC GCC TGC TAC CGC GAC GAA ACC GAT CGC GAA TAC CTG AAA GGG ATC --- GGT GAA ACG GTG AAG GTT CAC GAA GGG CAG ATG GTG ATT TGC GAT ATC GAC GAA GCC TAC CGC TTT ATC TGC GAT GCG CCG GTA --- --- AAA AAA GTG GTG CTG CGA GTC ACG GTT GAA GAC GGA TAC TTC CTC AAT ??? ??? 
Enterobacter_lignolyticus       ATG AGA ATT CTC GAT AAT TTA GAA CAC TTT AAG CAG GTT TAT CAC AGC GGA CGC AAG TGG CAG CGC TGC GTG GAA GCC ATC AGC AAC ATC GAC AAC ATC CGC CCG GGC GTG GCG CAC TCC ATC GGC GAT TCA CTG TCG TAC CGC GTG GAG GCC GAC AGC ACG --- ACC GAC GCG CTG TTC GTC GGC CAC CGC CGC TAC TTT GAG GTG CAC TAC TAC CTG CAG GGG CAG CAG AAA ATT GAG TAC GCG CCG AAA GCG CAG CTG CAG ACG GTG GAG TGC TAC CGC GAC GAA ACC GAC AGG GAG TAC CTG AAG GGC ATC --- GGC GAT ACC GTG CAG GTG CAC GAG GGG CAG ATG ATT GTC TGC GAC AAC AGC GAG GCC TAC CGC TTT ATC TGC GAC GCC CCG GTG --- --- AAG AAA GTG GTG CTC AGA GTC ACC ATT GAG GAC GGT TAT TTT CTG AAT ??? ??? 
Trabulsiella_odontotermitis     ATG AGA ATT CTC GAC AAC CTT GAG CAG TTC CGC GCC CTT TAC CCT TCC GGA CGC AAA TGG CAG CGC TGC GTT GAG GCG ATT AAA AAC ATC GAC AAC ATT CAG CCC GGC GTG GCG CAT TCC ATC GGT GAT TCG CTG GCT TAT CGT GTG ACC ACG GAG AAC ACC --- ACT GAC GCG CTG TTC GTC GGC CAT CGT CGG TAT TTC GAA GTG CAT TAC TAC CTG CAG GGA TCG CAA AGA ATA GAA GTC GCG CCA AAA AGC CAG TTG CAG GTG GTG GAG TGT TAT CGC GAT GAA ACC GAT CGC GAA TAC CTG AAA GGC TGC --- GGT GAA ACC GTG CAG GTG CAC GAA GGC CAA CTG GTG ATT TGC GAC AAC GAT GAA GCC TGC CGT TTC ATC AGT GAT GCC GCC GTG --- --- AAA AAA GTC GTA CTC AAC GTG ACC ATC GAA GAC GGT TAT TTC CAT AAC ??? ??? 
Enterobacter_hormaechei         ATG ATC GTT CTT GAG AGC CTG GAA CAG TTT CAA CAG CAT TAC CGC ACG GGT CGC AAA TGG CAG CGC TGC TCA GAA GCC ATT AAC AAT ATC GAT AAT ATC TCG CCC GGC GTA GCC CAT TCG ATT GGC GAT TCG CTG GCC TAC CGT GTG ACC AAT GAT GCC AGC --- ACC GAC GCG CTG TTT GTC GGG CAT CGC CGC TAT TTC GAG GTG CAT TAC TAC CTT CAG GGC GCG CAG AAA ATT GAA TAT GCC TCC AAA GAT GCG CTT CAG ACA GTG GAG TGC TAC CGC GAT GAG ACC GAT CGA GAA TAC CTG AAA GGC GTG --- GGT ACC ACC GAA CAG GTG CGC GAG GGG CAG ATC GTA ATT TGT GAG AAC CAT GAG GCG TAT CGC TTT ATC AGC GAG GAG CCG GTC --- --- AAA AAA GTC ATT CTC AAT GTG ACC ATC GAA GAC GGT TAT TTC CAT AAC ??? ??? 
Photobacterium_gaetbulicola     ATG ATC GTG CTA GAG AGC CTA GAG CAA TTC AAA GAG GTA TAC CGC GAT GGC CGT AAA TGG AAT CGC TGT GTC GAA GCG ATT GAA AAC ATC GCC AAT ATC AAA GAT GGC GTA ATG CAC TCC ATC GGC GAT TCG CTG GTT TAC ATG ATT GAA GAC GGT GTT GCC CGC AAC ACC GGC ACC TTC GAA GGC AAC CGC CGT TAC TTC GAT GTG CAC TAC TAC CTG GAA GGC CGT GAA ACC GTT GAG TTC GCT GAC AAG TCA GAG CTT GAC GTG GTG GAG GCC TAC CGC GAC GAA ACC GAC CGC GAA TAC CTG CAA GGT GCC --- GGC GAA ACC CGC GAG CTG TAC GAA GGC CAA GTG GCG ATT TGC GAC AAC CAC AAA GCG TAT CGC TTC CAC GGT GAC AAC CGG GTA --- --- CGC AAG GTC GTG CTG AAA GTG ACC ATC GAA GAT GGC TAC TTC CTT AAC ??? ??? 
Photobacterium_damselae         ATG ATC GTA CTT GAT AAC TTA GAG CAA TTT AAA TCG GTA TAT CGC AAC GGT CGT AAA TGG AAT CGC TGC GTA GAA GCT ATC AAT AAC ATC AGC AAT ATC AAA GAT GGC GTC ATG CAC TCT ATC GGC GAT TCA CTG GTG TAC ATG GTA GAA GAT GGC ACC GCA AAA GAG ACA GAA AAC TTT GTT GGT CAC CGT CGT TAC TTC GAT GTT CAT TAC TAC TTA GAA GGT CGT GAA ACC GTT GAA TTT GCG AAA AAA GAT CAA CTA ACA CTC ACT CAA GCA TAC CGA GAT GAA ACT GAC CGC GAA TAT CTA CAA GGT CAA --- GGT GAA ACT CGT GAA TTG ACT GAA GGC CAA GTC GTT ATT TTT GAA AAC GAT GAA GCC TAC CGT TTT TGT GGC GAT AAC CGC GTT --- --- CGC AAA GTG GTG CTG AAA GTG ACA ATA GAA GAC GGT TAC TTC TTA AAT ??? ??? 
Vibrio_harveyi                  ATG ATC GTG TTA GAC AAC TTA GAA CAA TTC AAA GTC GTG TAC CGC GAC GGT CGT AAA TGG AAC CGC TGC GTG GAA GCG ATT GAG AAC ATC GCC AAC ATC AAA GAC GGC GTG ATG TAT TCG ATT GGT GAC TCT CTG GTT TAC ATG GTT GAA GAC GGC ACA AAA --- CAA ACC GAC CTG TTT GAA GGG AAC CGC CGC TAC TTC GAG GTG CAT TAC TAC CTA GAA GGT CGC GAA ACT GTG GAG TTC GCC GAC AAA TCC GAT TTA CGC CTA GAG CAA GCA TAT CGA GAT GAA ACT GAC CGC GAA TTT CTC TCC GGT CAA --- GGT GAG ACT CGT GAG CTT TAC GAA GGC CAA GTG GCA ATT TTT GAT AAC GAT AAA GCG TAC CGC TTC CAC GGT GAC AAC CGA GTA --- --- AGA AAA GTG GTG CTC AAA GTG ACC ATC GAA GAT GGC TAT TTC CTA AAT ??? ??? 
Vibrio_vulnificus               ATG ATC GTG TTA GAC AGC TTA GAG CAA TTC AAA CAG GTA TAT CGC AAC GGT CGT AAA TGG AAC CGC TGT GTG GAA GCG ATT AAT AAC CTC AAC CAT ATC AAA CCG GGG GTG ATG CAT TCG ATT GGT GAT TCC TTG GTT TAT ATG CTG GTG GAA GGC AGC TCT CAA AGC GGT GAA ACC TTT ACC GGA AAC CGT CGT TAC TTT GAT GTG CAT TAC TAC CTC GAA GGC GGC GAA ACC GTA GAG TTT GCC GCC AAA TCC GAA CTC GAG ACC GTG ACC CAT TAT CGC GAT GAA ACC GAT CGC GAG CAA CTG CAA GGC CAA --- GGA GAA ACG CGC CAA CTA CAA CAA GGT CAA GTG GCC ATT TTT GAA AAC GAC AAA GCC TAC CGT TTT TGC GGC AAC CAA GCG GTG --- --- AAA AAG GTG GTG CTG AAA GTG ACG ATC GAG GAT GGC TAT TTC CTC AAT ??? ??? 
Vibrio_shilonii                 ATG ATC ATC TTA GAG AGC TTA GAA CAA TTT AAG TCG GTC TAT CGT AAT GGC CGG AAG TGG AAT CGT TGC ATA GAA GCC ATT GAA AAT ATT GAA AAT ATC AAA GAT GGC GTA ATG CAC TCT ATC GGG GAT TCT CTG GTT TAT ATG ATT GAA ACC AAT GAG AGC AAA CGG ACT GAA CTC TTC GAG GGC AAC CGT CGT TAC TTT GAT GTG CAC TAC TAC TTG GCA GGT CAT GAG GTT ATT GAG TTT GCA AGC AAA GCC GAC CTG ACA CTT GAG CAG CGA TAT CAA GAC GAA ACT GAC CGA GAG TTT TTC TCT GGA CAA --- GGT GAG CGA CGT GAA GTC CAT CAA GGA CAG GTA GTG ATT TTC GAC AAT AGC GAA GCG CAT CGA TTT GTC AGT AAC GAG CCT GCT --- --- CGC AAG GTC GTG CTT AAA GTC ACC ATC GAA GAT GGC TAC TTC TTA AAC ??? ??? 
Photobacterium_leiognathi       ATG ATC GTA TTA GAT AGC TTA GCG CAA TTT AAA TTG GTG TAC CGC AAT GGA CGT AAA TGG AAC CGT TGT GTA GAA GCC ATT GAA AAT ATT GAA AAC ATC CAA GAT GGT GTG ATG CAT TCG ATT GGT GAT TCA CTG GTG TAC ATG GTG CAA AAC GGG GTA ACG CCA ACC AAT GGT CTG TTT ACT GGT AAT CGT CGC TAC TTT GAT GTG CAT TAC TAC CTT GAA GGT AGT GAG CAG GTG GAA GTG GCG GAG AAA GCA CAA TTA ACC ACT GAA GTG GCT TAC CAA GAT GAA ACA GAT CGT GAA ACC TTG GTG GGT TGT --- GGT GAA GTC ATT GCG TTA TCA GAA GGG CAA ATT GCG ATT TTT GAA AAC GAC AAA GCG TAC CGT TTC TTA GGT GAA AAC CCA GTA --- --- AGA AAA GTG GTG CTA AAA GTG ACC ATT GAA GAT GGC TAC TTC TTG AAT ??? ??? 
Vibrio_parahaemolyticus         ATG ATC GTG TTA GAC AGC TTA GAG CAA TTC AAA CAG GTA TAT CGC AAC GGT CGT AAA TGG AAC CGC TGT GTG GAA GCC ATT GGC AAC ATC GGC AAC ATC AAA GAT GGC GTG ATG CAC TCG ATT GGC GAT TCA CTG GTT TAC ATG GTT GAA GAT GGC ATC GCG AAA CAA ACC GAA ATG TTC ATC GGT AAC CGT CGT TAC TTC GAT GTG CAT TAC TAC CTC GAA GGC CGA GAA ACC GTT GAG TTC GCG GAT AAA ACC GCG TTG ACA CTA GAA CAA GCT TAT CGT GAT GAA ACC GAC CGC GAA TTT TTT TCT GGT CAG --- GGT GAA ACA CGC GAG CTT AGC GAA GGC CAA GTG GCG ATT TTT GAA AAC AGT GAA GCG TAC CGC TTC CAC GGA GAC AAC CGC GTA --- --- AGA AAA GTG GTG CTC AAA GTG ACC ATC GAA GAT GGC TAC TTC CTA AAT ??? ??? 
Serratia_fonticola              ATG CAC GTA TTA GAC AAC CTG GAG CAA TTC AAA GTG GTT TAC CGT GAC GGC CGT AAA TGG AAC CGT TGT GTG GAA GCC ATT GAC AAC ATT GCC AAT ATC AAA GAC GGC GTG ATG CAC TCC ATC GGC GAT ACG CTG GTT TAT ATG ATT GAA GAC GGC GTC ACC CGC AAT CGC TCG ACC TTT GAA GGC AAT CGT CGT TAT TTC ACC ATC CAT TAC TAC CTC GAG GGC GGC GAA ACG GTA GAG TTC GCG AAA AAA TCC ACC CTT TCC CCC GTT GAG GCC TAC CGC GAT GAA ACC GAC CGC GAA TAT CTG CAA GGC ACC --- GGG CAA ACC TGT GAA TTA CGT GCC GGG CAA CTG GCG ATT TTT GAC AAC CAG GAA GCC TAC CGC TTC CAC GGC GAT AAC CGG GTA --- --- AGA AAA GTG GTG CTG CGG GTC ACC ATT GAG GAT GGC TAC ATG TTG AAC ??? ??? 
Photobacterium_aphoticum        ATG ATC GTG TTA GAC AAC CTA GAC CAA TTC AAA GTG GTG TAC CGC AAC GGT CGT AAA TGG AAC CGC TGT GTA GAA GCC ATC AAC AAC ATC GAA AAC ATG AAA GAC GGC GTC ATG CAC TCC ATC GGT GAC TCA CTG GTG TAC ATG ATT GAA GAC GGT ATC GCT CAG CAG ACC GAG CAA TTC ATC GGC CAC CGT CGT TAC TTC GAT GTG CAT TAC TAC CTC GAA GGC CGT GAA ACG GTG GAG TTC GCC AGC AAG CAA GAC CTG AAC ATT GAG CAG GCT TAC CGC GAC GAA ACC GAC CGT GAA TGG CTA TCA GGC CAA --- GGT GAA TCT CGT GAA TTA TGT GAA GGC CAG GTC GTT ATC TTT GAA AAC GAC AAG GCT TAC CGC TTC CAC GGT GAC AAC CGA GTC --- --- AGA AAA GTG GTG CTG AAA GTC ACG ATT GAA GAT GGT TAC TTC CTC AAC ??? ??? 
Photobacterium_angustum         ATG ATC GTA TTA GAT AGC TTA GCG CAA TTT AAA TTG GTG TAC CGC AAT GGA CGT AAA TGG AAC CGT TGT GTA GAA GCC ATT GAA AAT ATA GAG AAC ATC CAA GAA GGT GTG ATG CAT TCG ATT GGA GAT TCA CTG GTG TAC ATG GTG CAA AAC GGT GTG ACA CCA ACC AAT GGT ATG TTT ACT GGT AAT CGT CGT TAC TTC GAT GTG CAT TAC TAC CTT GAA GGT AGT GAG CAA GTG GAA GTT GCG GAG AAA GCG CAA TTA ACC ACA GAA GTG GCT TAT CAA GAT GAA ACA GAC CGT GAA ACT TTG GTG GGC AGT --- GGT GAA GTC ATT GTG TTG TCG AAA GGG CAA ATT GCG ATT TTT GAA AAC GAC AAA GCG TAC CGT TTC TTA GGT GAA AAC CCA GTA --- --- AGA AAA GTG GTG CTA AAA GTA ACT ATC GAA GAT GGC TAC TTC TTG AAT ??? ??? 
Grimontia_hollisae              ATG ATC GTG TTA GAC AGC TTG GCG CAA TTC AAA CAG GTA TAT CGC AAC GGT CGC AAA TGG CAT CGC TGT GTG GAA GCC ATT AGC AAT ATC GGC AAC ATC AAC GAT GGC GTG ATG CAC TCG ATT GGC GAT TCG CTG GTT TAC ATG GTG GAA GAT GGC ATC GCA AAA CAA ACT GAA ACG TTC ATC GGC CAC CGT CGC TAC TTC GAT GTG CAT TAC TAC CTC GAA GGC CGT GAA ACT GTT GAG TTT GCC GAT AAA ACC GCA TTG AAG CTT GAA CAA GCT TAT CGT GAT GAA ACC GAC CGA GAA TTC TTT TCC GGT CAC --- GGT GAA ACA CGC GAG CTT TGC GAA GGC CTG GTG GCA ATT TTT GAA AAC AGC AAA GCC TAC CGC TTC CAC GGA GAC AAC CGC GTA --- --- AGA AAA GTG GTG CTC AAA GTG ACC ATC GAA GAT GGC TAC TTC CTG AAT ??? ??? 
Salmonella_enterica             ATG AAG GTT TTC GAT AAT CTG GCG TAT TTT AAG TCG TTT TGT CAG CGC CGA ACC CCG TGG CGG CAT TGT CTG GAA GCG ATA GCG AAC ATT GAT ACT CTG CAA CCC GGC GTT CCC CGT TCG ATT GAC AAC GTG CTG ACT TAT CGT CTG GAA AAA AAT GAG GCG --- ACT GAT GCA CTT TTT ATT AGT CGA CGC AAA TAT ATT GAT ATT TAT TAT ATT TTA CAG GGA CAG CAA AAA ATT GAG TAT GCG ACT AAA ACA GCG CTC CAG ACA ATC TCA TAC TAC CGT GAT GAG ACC GAC AGC GAA TAT CTA AAA GGA TGC --- GGC TCT ATT ATC CAA ATA CAT GCA GGA CAG TTA TTT ATT TGC GAT AAC CGG GAA GCT TAC CGC TTT ATC TGC CGT ACC CCC GTT --- --- AAG AAA ATC GTA TTT AGT GTC GTT GCC ACA GAT TGC GTT ATA CCA GAT ??? ??? 
Morganella_morganii             ATG ATC CTG TTT ACT GAT TTA ACG GAT TTT CAG CGT TTT TTC CGT CAG GGA AAA AAA TGG CAG CGT TGT ATT GAG GCC ATC AAT AAC CTC CCG TCT ATT CAT CCT GAT GTG ACC TAT TCT GTC GGT GAT TCG CTG ATA TAC CGC CTT CAG ACT AAA GCA GCG --- CCG CAG CCG GAT TTC CTC GGT AAA CGC CGT TAT TTT CAG GTG CAT TAC TGG CTG GAG GGG GAG GAG CGC GTG GAG TAT GCC GCC AAA TCC GCC CTG ACC CCG GTA AAT GCT TAC AGT GAT GAA ACT GAC CGG GAA ATC CTG CGC GGT AAA --- GGG GAA ACC CTG CTC TGC AAA CCC GGC AAT GTG CTG GTG TGT GAA AAT CAC GAG GCA TAC CGG TTC ACC TGC TCA GGC GAT GTC --- --- CGC AAA GTG GTG CTT ACC GTG ACC ATT GAA GAT GGT TAT TTC CTG AAT ??? ??? 
Aeromonas_hydrophila            ATG ATC ACC CTG GAC AAC CTG ACC CTG TTC AAA AAC ATC TAC CGG GAG GGC AAG AAG TGG GGC CGC TGC GTG GAG GCC ATC GAC AAC CTG CCG AAC CTC AAG CCC GGC ATC TGC CAC TCC ATC GGT GAC TCC CTC ACC TAC CGC TTG CAG GAG GGG GCC AGC CCG GCC ACC TCA CTG TTC GAG GGG CAG CGC CGC TAC TTC GAC GTT CAC TAC TAC CTG GAA GGG GCA GAG ACG GTG GAG TGG GCC CCC AAG TCG GAG TTG CAG GTC GAG CAG GCC TAT GAC GAC ACC ACC GAC CGC GAG TGG CTG GCT GGT GAG GTG CGC GAG CGC CAG CAA GTC GGC AAC GGT CAG GTG GTG ATC TTC GAG AAC GAC GAG GCC TAC CGG TTC GCA GGC GAC AGC CCG GTG --- --- CGC AAG CTG ATC ATC AAG GTC ACC GTC GAA GGC GGC TAC TTC AAA AAC ??? ??? 
Aliivibrio_logei                ATG ATC ATT TTA GAC AAC TTA GAA CAA TTT AAA GTG GTA TAT CGT GAC GGC CGC AAA TGG AAC CGT TGT GTA GAA GCA ATT GAA AAC ATT GGC AAT CTT AGA GAT GGG ATT ATG TAT TCG ATT GGC GAT TCT CTG GTT TAT ATG ATT GAA GAT GGC GTT GCC AAA AAC ACC GAA AAC TTT GTA GGT AAT CGT CGT TAT TTC GAC ATC CAC TAT TAC CTC GAA GGC CGT GAA AGC GTT GAA GTG GCT GAT AAG TCT GAC CTA GAA AGT GTG CAA GCC TAT TCA GAT GAA ACT GAC CGA GAA CAC CTA AAC GGC AAC --- GGT CAA ATA CAT CAA CTT TGT GAA GGC CAA GTG GCT GTA TTT GAT AAC AAC AAA GCG TAC AAA TTC CAT GGC GAT AAT CGT GTT --- --- CGT AAA GTG GTT CTA AAA GTC ACT ATC GAA GAT GGT TAT TTC TTG AAT ??? ??? 
Aeromonas_veronii               ATG ATC ACC CTG GAC AAC CTG ACC CTG TTC AAA AAC ATC TAC CGG GAA GGC AAG AAG TGG GGC CGC TGC GTG GAG GCC ATC AAC AAC CTG CCG AAC CTC AAG CCA GGA ATC TGC CAC TCC ATC GGT GAC TCC CTC ACC TAC CGC TTG CAG GAG GGG GCC AGC CCG GCC ACC TCC CTG TTC GAG GGG CAG CGC CGC TAC TTC GAC GTC CAC TAC TAC CTG GAA GGA GCA GAG ACG GTG GAG TGG GCC CCC AAA TCG GAG CTG GCG GTC GAG CAG GCC TAT GAC GAC ACC ACC GAC CGC GAG TGG TTG GCC GGT GAG GTG CGT GAG CGC CAG CAG GTG GGT AAA GGG CAG GTG GTG ATC TTC GAG AAC GAC GAG GCC TAC CGG TTC ACA GGA GAC AGC CCG GTA --- --- CGC AAG GTG ATC ATC AAG GTC ACC GTC GAA GGC GGC TAC TTC AAA AAT ??? ??? 
Buttiauxella_gaviniae           ATG ATC ACC CTG GAC AAC CTG ACC CTG TTC AAA AAC ATC TAC CGG GAG GGC AAG AAG TGG GGC CGC TGC GTG GAG GCC ATC AAC AAC CTG CCG AAC CTC AAG CCC GGC ATC TGC CAC TCC ATC GGT GAC TCC CTC ACC TAC CGC TTG CAG GAG GGG GCC AGC CCG GCC ACC TCA CTG TTC GAG GGG CAG CGC CGC TAC TTC GAC GTC CAC TAC TAC CTG GAA GGG GAA GAG ACG GTG GAG TGG GCA GCC AAG AGC GAG CTG GCG GTC GAG CAG GCT TAT GAC GAC ACC ACA GAC CGC GAG TGG CTG GCC GGT GAG GTG CGT GAG CGC CAG CAG GTG GGC AAC GGG CAG GTG GTG ATC TTC GAG AAC GAC GAG GCC TAC CGA TTC GTC GGC GAC AGC CCG GTG --- --- CGC AAG GTG ATC ATC AAG GTC ACC GTC GAA GGC GGC TAC TTC AAG AAC ??? ??? 
Aeromonas_piscicola             ATG ATC ACC CTG GAC AAC CTG ACC CTG TTC AAA AAC ATC TAC CGG GAG GGC AAG AAG TGG GGC CGC TGT GTG GAG GCC ATC AAC AAC CTG CCA AAC CTC AAG CCC GGC ATC TGC CAC TCC ATC GGT GAC TCC CTC ACC TAC CGC TTG CAG GAG GGG GCC AGC CCG GCC ACC TCA CTG TTC GAG GGG CAG CGT CGC TAC TTC GAC GTC CAC TAC TAC CTG GAA GGA GCG GAG ACG GTG GAG TGG GCT GCC AAG AAT GAG CTG GGA GTC GAG CAG GCC TAT GAC GAC ACC ACG GAT CGC GAG TGG CTG GCC GGC GAG GTG CGT GAG CGC CAG CAG GTG GGC AAT GGG CAG GTG GTG ATC TTC GAG AAT GAC GAG GCC TAC CGC TTC GCA GGC GAC AGC CCG GTG --- --- CGC AAG CTG ATC ATC AAG GTC ACG GTC GAA GGC GGC TAC TTC AAA AAC ??? ??? 
Providencia_stuartii            ATG ATC GTA TTA AAC AGT CTT GAA CAA TTC GGC CTC GTT TAT CGT GAC GGT CGT AAA TGG AAT CGT TGT ATA GAG GCT ATC AAC AAT ATC AAT CAT ATC CGA GAA GGC GTA GCA CAT TCT ATT GGC GAT TCT CTG GTA TAT CGC ATC GCC AAA GGT CAA GAC AAA TCA ATG CCT TTA TTT GAG GGT AAT CGC CGC TAT TTT ACT GTG CAT TAT TAC CTT GAT GGT GAA GAA ACT ATT GAA GTT GCA AGT AAA TCG ACT CTT AGG CCA AAC GGC CAT TAC AGC GAT GAA ACC GAC CGT GAG TTT TTT ACT GGC AAC --- GGA GAG AAG CAT CAT TTG AAG CAA GGT GAA ATT GCT ATC TTC GAA AAT CAT GAA GCC TAC CGT ATT CAT GGT AAT GAC CAA GTG --- --- AAG AAA GTC GTG CTA CGC GTC ACC GTT GAA GAT GGT TAT ATG CTA AAC ??? ??? 
Serratia_grimesii               ATG ATT ATT ATC GAA TCA TTA GCC GAG TTT CAG CTT ATT TAT CGT GCA GGG AAA AAA TGG CAG CGC TGT ATG GAG GCC ATT AAC AAT ATT GAA CGT ATC GAG CCG AAT GTT TTT TAT TCG GTT GGC GAT TCA CTG GTT TAT CGG CTG GCG TCT GGC CCA GGC CAG CAG CAT GGC TGG TTG GAG GGG AAT CGT CGT TAT TTT GAT CTG CAC TAT TAC CTT GCC GGA CAG GAA ACG ATC GAA GTT GCT GAT AAA AGC GTG CTG ACT TCG GTG GTG GCC TAT CAG GAT GAA ACC GAT CGT GAG TTT TTC AGT GGG CAG --- GGT GAA ACA CAT CGC GTA GGG CAA GGC AAC GTC GTT ATC TTT GAT AAC CAT CAG GCT CAC CGA TTT AAA GAA AGT AAC CAG GTA --- --- AAA AAA GTC ATT TTA AAA GTG ACT ATA GAA GAC AGC TAT TTC GTT AAC ??? ??? 
Hafnia_paralvei                 ATG ATT ATT GTA AAT ACT TTA GAA GAA TTT CAG AGC GTT TAC CGG GCT GGG AAA AAA TGG CAG CGC TGT ATG GAA GCA ATT AAT AAC CTG AAG AGT ATT AAG CCT GAT GTT TTT TAT TCG ATA GGG GAT TCA CTA GTT TAT CGT CTT ACG GAA TGT TCT GGT GCT GGT GAC GGG CTA TTT GAA GGC AAC CGC CGT TAC TTC GAT GTG CAT TAT TAT CTT GCC GGA CAA GAA ATG GTG GAA TAT GCC GCC AAA GCT GAA TTA ACC CCA GAA GTT CCT TAT AAG GAT GAA TGT GAC CGA GAG TAT TTC AGC GGG CAG --- GGC GCA AAA CAG AAG CTG GTG GCG GGT AAT GTC GCC ATT TTT GAA AAC CAC GAA GCG TAC AGA TTT TCT GCT GGG GAT AGC ATG --- --- CGG AAG GTC ATC CTG AAA GTT ACC GTT GAG GAA ACG TAT TTC CTT AAT ??? ??? 
Buttiauxella_agrestis           ATG ATT ATT TTA AAT ACC TTA GAT GAA TTT AAG AGC GTT TAT CGG GTG GGC AAA AAA TGG CAA CGC TGT ATC GAG GCT ATC AAT AAC CTT AAT AAC ATT AAG CCA AAT GTT TTT TAT TCG ATT GGT GAC TCG CTG GTT TAT CGC CTT GCC GAA GGT AAT GCA CAC AAC GGG GAA TTA TTT GAA GGC AAC CGC CGC TAT TTC GAT GTG CAT TAT TAC CTT AGC GGG CAC GAG TCC ATT GAG GTT GCG GAT AAA AGC GCC TTG ATG CCT GAG ATG GCT TAT CGC GAT GAA AGT GAC CGC GAG TTT TTC AGC GGG CAG --- GGC GTG CGG CAT GAA CTC AAG GCT GGC AAC GTC ATC ATC TGT GAA AAC CAC CAG GCA CAC CGG TTC TCG CAG GGT AAA GAC GTC --- --- AAG AAA GTG ATC TTA AAA GTC ACC GTT GAG GAA ACG TAT TTC TTA AAC ??? ??? 
Serratia_marcescens             ATG ATC ATT CTC GAA TCC CTG GCG GAG TTT CAG CGC ATC TAT CAC AGC GGC AAG AAG TGG CTG CGC TGC ATG GAG GCG ATC GCC AAT GTC GAT CGC ATC AGC CCG AAC GTG TGC CAT TCG ATC GGC GAC TCG CTG ACG TAT CGG CTG AGC GTC GGT GCC GGC CGC CAG CAC GGT TGG CTG GAG GGC AAC CGC CGC TAC TTC GAC GTG CAC TAT TAC CTC GAG GGG GAA GAG ACC GTC GAG GTG GCC GAC AAG CGG GCG CTG ACG ACG GTG GCG CCC TAT CAG GAC GAA ACC GAC CGC GAG TTT TTC AGC GGC GAA --- GGC GAG AAG CGC CGG GTC GGC AAA GGC AAC GTG GCG ATC TTC GAA AAC CAC CAG GCT CAC CGC TTC ACA GAA AGC GGC AAG GTA --- --- AAA AAA GTC ATT TTA AAA GTG ACG GTG GAA GAC AGC TAT TTT GTT AAC ??? ??? 
Hafnia_alvei                    ATG ATT ATT TTT AAT ACC TTA GAC GAG TTC CAG CGT ATT TAT CGA GAG GGG AAA AAA TGG CAG CGT TGT ATG GAG GCT ATC AAT AAC CTT AAA AAT ATT GCT CCT AAT ATT TTT TAT TCG ATA GGC GAT TCG CTG GTA TAT CGC CTC GCT GAT GGT TCT GTA GAG CCG GTA GAG TTA TTT GAA GGA AAT CGG CGT TAT TTT GAT GTG CAT TAT TAT TTA GCC GGA CAG GAA ACG GTT GAG ATT GCG AAT AAA AAC ACG TTA ACT CCA GAA ATT GCC TAT CGC GAT GAG AGT GAT AGG GAG TTT TAT CGT GGC CGA --- GGC GAG GCT TAT TCC CTC AAA GCG GGC AAC GTT GTT ATT TTC GAA AAC CAT CAG GCA CGC CGC TTT GGG CAA GCG CAA GGC GTG --- --- AGG AAG GTT ATT CTT CAG GTG ACC GTT GAG GAG ACG TAT TTC CTT AAT ??? ??? 
Tessaracoccus_lapidicaptus      ATG CGC ATC TTC GAC AGC CAC TCC GCT CTG CGC GAC CTC CTC GGC GCG GAG AAG AGG TGG TCG CGG ACC CGC GAA GCA CTC GCC GCC GCG CCG TCG CTC ACC GAG GGC GTC ACC TAC TCC ATC GGG GAT TCC CTC ACC TAC CGC ACC GGT AGC GCG GCT GAT CTG GCC GCG CGC GAA CTC ACC GGG CGG CGT CGC TAC CTC ATG GTG GTG GCG TCG ATG GCA GGC GAG GTC GCG GTG GAG GTG GCG CGT CAG GAG GAC CTG GCC GCC GTC GCC CCC TAC AGC GAC CTC ACC GAC CGC CAG CCC TTC ACC GGG CCG --- GCG GAG CGG GTC CTC ATT CCC GAC GGA GGC CTG CTG ATC GTC GAC ATC GAC GAG GCC GCC CGC ATC CTC CCC ACC CCC GAC GCG --- --- CGG GCC GTG CTG CTG CAC GTC ACC GTC GAG GGC GCC AGC TTC CAC AAC ??? ??? 
Trueperella_pyogenes            GTG TTG GTG TTT TCG ACT CTC GAT CAG TTC TCG AAC CAA TTC GGT GGT GAA CGT CGG TGG CTT CGA ACA TTG GAG GCA ATC AAT AAC TGC GGC TCA ATC AGG AGA GGA GCA AGT TAT TCA GTT GGT GAC AGC TTG ACC TAT CGG ATT ACA CCT GCT TCC GAA CTG GTC ACG GAG AGC TTC GTT GGC AGG AGA CGG TAT CAC GCG GTT ATC TAC GTC GTC AGC GGC GCC CTC TAC ATT GGC ATC TCC AAG AAA GCG GGA CTA GAA AGG ACG CGA GCC TAC TCG GAC CTT TCG GAT ACC GAA TTG TTC AAA GGC TGT --- GGC CAA CGC ACA AGA TTA GAC GCA GGG GCG ATT GGG ATT GTT GAA ATT GAT GAA GCT TAT CGT GTT CTT GGG GGA GAC GGC --- --- --- GAC GTC GTT AGC CTC CAC GTG ACT GTC GAG GGA AGA GGC TTC CCA AAC ??? ??? 
Gardnerella_vaginalis           ATG CGT ATT TAT AAC AAT GTT TCA GAA TTT GAA GTA TGT ATA AAT GGA AGT CGA AAA TGG AAG CGT TTT ATT GAG GCT ATT GGT AAG GTC AAG TGT TTA TCT AAT GAT GAG GCT TAC TCT ATA GGG GAT TCT ATT ACA TTT TGG ACT CAT GAT TTG CGA TGC GTT GTT GAA AAA CGG TTT ACA GGT TCG AGG CGA TAT CAA ACT GCA TTG TAT TCT GTA AGC GGT ACT GCT TAT ATT GAT ATT GCT GAT AAA GGG AAT TTA CTA CCA GTT GAA CGC TAT AGT GAT TTG AGC GAT CGT GAA TAT TTC GTA GGT TCT --- GGA GAG ACT GTT CAG TTA CAT GAA GGC GGT ATT CTT CTT GTT GAT ATG TCT GAG GCG TTT AAA ATA CTG CAT CAA TCT TAT GGC --- --- GTA TTG ATG CAG GCT CAG GTA ACG GTT GAA GGT TTT AGC TTC CCT AAT ??? ??? 
Bifidobacterium_breve           ATG CGA CTA TAC GAC AGC TTG GAA ATG TTC GAT ACC GGA TTG TCT CAT GTG CGC AAA TGG ATG CGA TGC GGT CAG GCC ATT AGG CAA TCG ACC CGT CTG CCG TTG GAC ACC GCG TAT TCG CTC GGC GAT TCG CTG ACC TTC TGG GCG GTA CCG GCA GGC GCG CTC GCT GAT GAT CGT TAT GTC GGG CAC CGC CGG TAC CAC ACG GTG CTC TCG CCC ATC GAC GAG CCG TTA GCC GTG TAT GTC CGC CCG AAA ACG GCA TTG CGG CCA GCC GGT GCA TAC AGC GAC GTT TCG GAT CGC GAA TGG TTT GAT GAG GAA --- GGC GTA CCA TGC GTC GTG CCT GTC GGG GGC ATC CTG ATT ATG GAA GAA TGC GAA GCG ATG CGC ATT AAC GCC ACT TCC GTG GCC GTG GGT CGC GTA TCG GTG GTC CGC GTC ACG GTG GAG GGG TTC ACG TTC CCC AAT ??? ??? 



Printing out site pattern counts


        40        459  P

Escherichia_coli                 --- --- --- --- ??? AAA AAA AAA AAA AAA AAA AAC AAC AAC AAC AAG AAG AAT AAT ACA ACA ACC ACC ACC ACC ACT ACT AGG ATC ATC ATC ATC ATC ATC ATC ATC ATG ATT ATT ATT ATT ATT CAA CAA CAA CAA CAC CAC CAG CAG CAG CAG CAG CAT CAT CAT CAT CCG CCT CGA CGC CGC CGC CGC CGG CGT CGT CTA CTC CTG GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAC GAC GAC GAC GAG GAG GAG GAT GAT GAT GAT GAT GCC GCC GCG GCG GCG GCG GCG GCG GGA GGC GGC GGC GGG GGG GGG GGT GGT GTA GTC GTC GTC GTC GTG GTG GTG GTG GTT GTT GTT GTT TAC TAC TAC TAC TAT TAT TAT TAT TAT TAT TAT TCA TCC TCC TCT TGC TGC TGC TGC TGG TTA TTA TTA TTC TTC TTG TTT TTT TTT
Citrobacter_amalonaticus         --- --- --- --- ??? AAA AAA AAA AAA AAA AAG AAC AAC AAT AAT AAG AAG AAT AAT ACA GAT ACC ACC ACC ACC ACC AGC AGG AAC ATC ATC ATC ATC ATG ATT ATT ATG ATA ATT ATT ATT ATT CAA CAA CAA CAG CAC CGC CAA CAA CAG CAG CAG CAT CAT CAT CAT GCC CCA CGT CAA CGC CGC CGT CGT CGC CGC CTG CTC CTG AAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAG GCG GAC GAC GAT GAT GAA GAG GAG GAC GAC GAT GAT GAT GCA GCC GCA GCA GCC GCC GCG GCG GGA GGC GGG GGT GGA GGA GGT GGT GGT GTG GTC GTC GTG GTG ATC ATT GTC GTG GTA GTA GTC GTT TAC TAC TAC TAT TAT TAT TAT TAT TAT TAT TAT TCC TCC TCT TCC TGC TGT TGT TGT TGG CTC CTG TTA TTC TTT CTG TTT TTT TTT
Citrobacter_braakii              --- --- --- --- ??? AAA AAA AAA AAA AAA AAA AAC AAC AAT AAT AAG AAG AAT AAT GCA GAT ACC ACC ACC ACC ACC AGC AGG AAC ATC ATC ATC ATC ATG ATT ATT ATG ATA ATT ATT ATT ATT CAA CAA CAA CAG CAC CGC CAA CAA CAG CAG CAG CAT CAT CAT CAT GCC CCA CGT CAA CGC CGC CGT CGT CGC CGC CTG CTC CTG AAA GAA GAA GAA GAA GAA GAA GAA GAA GAG GAG GCG GAC GAT GAT GAT GAA GAG GAG GAC GAC GAT GAT GAT GCA GCC GCA GCG GCC GCC GCG GCG GGA GGC GGG GGC GGA GGA GGT GGT GGT GTG GTC GTC GTG GTG ATC GTT GTC GTG GTA GTA GTC GTT TAC TAC TAC TAT TAT TAT TAT TAT TAT TAT TAT TCC TCC TCT TCC TGC TGT TGT TGT TGG CTC CTG TTA TTC TTT CTG TTT TTT TTT
Citrobacter_freundii             --- --- --- --- ??? AAA AAA AAA AAA AAA AAA AAC AAC AAT AAT AAA CGG AAT AAT ACA GAT ACC ACC ACC ACC ACC AGC AGG AAC ATC ATC ATC ATC ATG ATT ATT ATG ATA ATT ATT ATT CGC CAA CAA CAA CAA CAC CAC CAA CAG CAG CAG CAG CAT CAT CAT CAT GCC CCA CGT CAG CGC CGC CGT CGT CGC CGC CTG CTC CTG AAA GAA GAA GAA GAA GAA GAA GAG GAG GAG GAG GAG GAC GAC GAT GAT GAA GAA GAG GAC GAC GAT GAT GAT GCT GCC GCA GCG GCC GCC GCG GCT GGA GGT GGT GGC GGA GGA GGC GGT GGT GTG GTC GTC GTG GTG ATC GTT GTC GTG GTA GTA GTC GTT TAC TAC TAT TAC TAT TAT TAT TAT TAT TAT TTC TCC TCC TCG TCG TGC TGT TGT TGT TGG CTC CTG TTA TTC TTT CTA TTT TTT TTT
Citrobacter_koseri               --- --- --- --- ??? AAA AAA AAA AAA AAA AAA AAC CAC AAC AAC AAA CGA AAT AAT ACC ACG ACC ACC ACC GCC ACC ACG AGG AAC ATC ATT CTC CTC ATG ATC ATC ATG ATT ATT ATT ATT GTC CAA CAA CAG CAG CAC CAC CAG CAG CAG CAG CGA CAT CAT CAT CAT GCC CCC CGC CGG CGC CGC CGT CGT CGC CGC CTG CTC CTG AAC GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAC GAC GAT GAT GAG GAA GAT GAC GAT GAT GAT GAT GCC GCT GCT GCA GCC GCC GCC GCG GGA GGT GGT GGC GGA GGG GGG GGG GGT GTC GTC GTG GTA GTT GTG GTT GTC GTG GTA GTG ATT GTG TAC TAC TAC TAT TAC TAC TAT TAT TAT TAT TAT TCT TCT TCC TCT TGC TGC TGC TGT TGG TTG CTG TTA TTC TTT CTG GTT TTT TTT
Klebsiella_oxytoca               --- --- --- --- ??? AAA AAA AAA AAG AGA AAA AAT TCG AAT AAT AAA CGT AAT GAC AGC CAG ACC ACT GTT ACG ACT TCC AGA ACC ATA ATC ATT CTC ATG ATC GTC ATG ATT ATC ATC ATT ATT CAA CAG CAA CAG CAC CAT CAA CGG CAA CAG CAG AAC CAC CAT CTG GCT CCT CGC AGG CGC CGC CGC CGC CGC CGT CTG CTC CTC GAA AAT GAA GAA GAA GAA GCC GAA GAA GAG GAG GAA GAC GAT GAC GAT CAG GCA GAG GAT GAT GAC GAT GAT CAC GCC CCG GCG GCC GCT ACC GCT GGT GGC GGA GGA GGA GGT GGC GGC GGC ACC GTT GTG GTC GTC GTG GTC GTG GTG GTG GTG ATA GTG TAC TAC TAT TAT TAT TAT TAC TAT TAT TTT TGC TCG AGC TCG AGT TGC ATT TGC TGT TGG CTG TTG TTA TTT TTC CTC TTC TTC TTT
Yokenella_regensburgei           --- --- --- --- ??? AAA AAA AAG AAA AAA AAA AAC ACC AAC AAC AAG CGG AAC GAT ACG CAG ACC ACC GTC ACC ACC GCC AGA ATC ATT ATC ATC ATC ATG ATC ATC ATG ATT ATC ATT ATT CGC CAA CAG CAG CAG CAT CAC GAA CAG CAG CAG GCG CAT GAT CAT CAT GAG CCC CGC CGC CGC CGC CGC CGC CGC CGT CTG CTC CTG GAC GAG GAA GAA GAA GAA GAG GAA GAG GAG GAA GAG GAC GAC GAT GAT CAG ACC AGC GAT GAT GAC GAC GAC CCT GCG CCA GCG GCG GCT ACC GCG GGA GGC GGG GGC GGC GGC GGT GGT GGT GAG GTG GTG GTA GTG GTG GTG GTC GTC GTA GTG ATT GTG TAC TAC TAT TAT TAC TAC TAC TAC TAC GTG TGC TCA ACC TCG TCC TGT TGC TGT AGC TGG CTG CTG CTG TTC TTC CTG TTC TTC TTC
Enterobacter_aerogenes           --- --- --- --- ??? AAA AAA AAA AAA CGA AAA AAT GCG AAC AAT AAA CGC AAC GAT ACC AAT ACG ACG GTC ACC ACC TCC AGA ATC ATT GTT ATT CTC ATG ATC ATC ATG ATC ATC ATC ATT GTT CAG CAA CAG CAG CAT CAC CAG CGC CAG CAA CAG AAC GAC CAC CTC GCC CCG CGC AAT CGC CGG CGC CGC CGC CGC CTA CTG CTG GAA AAT GAA GAA GAA GAG GCC GAA GAA GAG GAG GAA GAT GAC GAT GAT AAG GAA GAA GAT GAT GAC GAC GAT CAT GCG CCG GCG GCC GCC ACG GCC GGT GGG GGC GGC GGG GGG GGT GGC GGA ACC GTG GTC GTA GTT GTG GTG GTG GTG GTG GTG GTG GTG TAC TAT TAT TAT TAC TAC TAC TAC TAC TTT TGC TCG AGT TCC AGC TGC ATC TGC TGC TGG CTG CTG TTA TTT TTC CTC TTT TTT TTT
Klebsiella_pneumoniae            --- --- --- --- ??? AAA AAA AAA AAA CGA AAA AAT GCG AAC AAT AAA CGC AAC GAT ACC AAT ACG ACG GTC ACC ACC TCC AGA ATC ATT GTT ATT CTC ATG ATC ATC ATG ATC ATC ATC ATT GTT CAG CAG CAG CAG CAT CAC CAG CGC CAG CAA CAG AAC GAC CAC CTC GTC CCG CGC AAG CGC CGG CGC CGC CGC CGC CTA CTG CTG GAA AAT GAA GAA GAA GAA GCC GAA GAA GAG GAG GAA GAT GAC GAT GAT AAG GAA GAA GAT GAT GAC GAC GAT CAT GCG CCG GCG GCC GCC ACG GCC GGT GGG GGC GGC GGG GGG GGC GGC GGA ACC GTG GTC GTA GTT GTG GTC GTG GTG GTG GTG GTG GTG TAC TAT TAT TAT TAC TAC TAC TAC TAC TTT TGC TCG AGT TCC AGC TGC ATC TGC TGC TGG CTG CTG TTA TTT TTC CTC TTT TTT TTT
Enterobacter_lignolyticus        --- --- --- --- ??? AAA AAA AAG AAA AGA AAG AAT GCC AAC AAT AAG CGC AAC GAC GCC CAG ACC ACC GTC ACC ACC TCG AGA AAC ATC ATT ATT CTC ATG ATC ATC ATG ATT ATC ATC GTC GTT CAG CAG CAG CAG CAC CAC CAG CGC CAC CAG CAG CAC AGC CAC CTG CCG CCG CGC AAG CGC CGC CGC CGC CGC AGG CTG CTC CTG GAT AGC GAA GAG GAG GAG GAG GAA GAG GAG GAG GAA GAC GAC GAC GAT CAG GAG GCG GAC GAT GAC GAC GAC CAC GCG CCG GCG GCG GCC ACG GCC GGC GGC GGA GGC GGG GGG GGC GGC GGT ACG GTG GTC GTG GTG GTG GTG GTG GTG GTG GTG GTG ATT TAC TAC TAT TAC TAC TAC TAT TAC TAC TAC TGC TCA AGC TCC AGC TGC ATC TGC TGC TGG CTG CTG TTA TTT TTT CTG TTT TTC TTT
Trabulsiella_odontotermitis      --- --- --- --- ??? AAA AGA AAA AAA AAC AAA AAC GCC AAC AAC AAA CGC AAC GAT ACG CAG ACC ACC GTC ACT ACC GCT AGA AAC ATC ATC ATT CTC CTG ATC ATC ATG ATA ATT ATT ATT CTT CAA CAG CAA CAG CAT CAC GCC CAG CAG CAG TCG CAT GAT CAT CAT CCA CCC CGT CGC CGC CGT CGG CGT CGC CGC CTG CTC CTG GAA AAA GAA GAA GAA GAA GAG GAG GAA GAA GAA GAG GAG GAC GAT GAT CAG ACC AGC GAC GAC GAC GAT GAC CCT GCG GCC GCG GCG GCC ACC GCG GGT GGC GGA GGC GGC GGA GGC GGT GGT GTG GTG GTG GTG GTG GTG GTG GTC GTG GTA GTG GTT GTG TAC TAC TAC TAT TAT TGC TAT TAC TAT GTC TGT TCG AAC TCC TCC TGC TGC TGC AGT TGG TTG CTG CTT TTC TTC CTG TTC TTC TTC
Enterobacter_hormaechei          --- --- --- --- ??? AAA AAA AAA AAA AAT AAA AGC GAG AAT AAC AAA CGC AAT GAG AAT GCG ACC ACC GTC ACC ACC GCC ATC AAC ATT ATC GTT CTT ATC ATC ATC ATG ATT ATC ATT ATT CAT CAG CAG CAG CAG CAT CGC CAG TCG CAG CAG GCG CAT CAT CAT CAT TCC CCC CGC CAA CGC CGT CGC CGC CGC CGA CTG CTC CTT ACC AAC GAG GAA GAG GAA GAG GAA GAG GAG GAA GAA GAT GAT GAT GAT CAG ACC GAT GAG GAG GAC GAT GAC CGC GCC CCG GCG GCC GCG AGC GCC GGT GGC GGT GGC GGG GGC GGG GGC GGT ACA GTA GTG GTC GTG GTG GTG GTC GTG ATT GAA TCA GTA TAC TAC TAC TAC TAT TAT TAT TAC TAC TAT TGC TCG GCC TCG ACG TGC GTG TGT AGC TGG CTT CTG CTG TTT TTC CTG TTC TTT TTT
Photobacterium_gaetbulicola      --- --- --- CGC ??? AAG ACC CAA AAG AAA CGC AGC AAC AAT AAC AAA CGT AAC GAC GAC GAG ACC ACC GAA AAC ACC GTT ATC AAC ATC ATC GTG CTA GTG CAC ATC ATG GTT ATC ATT ATT GTA GAA GAA CAA AAT CAC TAC GAG AAA CAA GAC CGT AAC CAC CAC CTT GAC GAT CGC AAA CGC ATG CGT CGC CGC CGC ACC CTG CTG GAA GAA GAA GAA GAA GAA GAG GAA AAA GAT GAG GAG GGT GCC GAC GAT GAG GAA TCA GAC GAG GAT GAC ACC CGC ATG CGG GGC GCT GCG GCC GCG GGC GGT GGC GGC GGC GGC GGC GGC GGC GTG GTA GTG GTA CTG GTG GTG GTC ATT GTG CGC GTC GCG TAC TAC TAC TAC TAC TAT TAC TAC TAC TTC GCC TCG GTT TCC GAT TGT GCC TGC GGT TGG CTT CTG CTA TTC TTC CTG TTC TTC TTC
Photobacterium_damselae          --- --- --- AAA ??? AAA ACC CAA AAA AAA CGC AAC AAC AAT AAT AAA CGT AAC GAT GAT CAA ACT ACA GTT GAG ACT GTG ATC AAC ATC ATA GTA CTT GTC TGT ATC ATG GTT ATC ATC ATT GTA GAA GAA CAA AAT CAC ACT TCG AAA CAA ACA CGT CAC GAT CAT TTA AAA GAT CGT AAA CGC ATG CGT CGT CGA CGC AAC CTG TTA GAA AAT GAA GAA GAA GAA CAA GAA GAA GAT GAA GAG GGC AGC GAC GAT GAA GAA GAT GAA GAT GAC GAT ACA CGC ATG CGC GAA GCG GCC GCA GCT GGT GGT GGT GGC GGC GGT GGT GGC GGT CTC GTC GTG GTT TTG GTT ACT GTG GTA GTG CGT GTA GTT TAC TAC TAT TAC TAC TAC TAC TAT TAC TTT GCA TCA ACC TCT AAC TGC CAA TTT GGC TGG CTA CTA TTA TTT TTC CTG TTC TTT TTT
Vibrio_harveyi                   --- --- --- --- ??? AAA ACT TCC AAA AAA AGA AAC AAC AAC AAT AAA CGT AAC GAC GAC GAT ACT ACC GAA CAA ACT GTT ATC AAC ATT ATC GTG TTA GTG CAC ATC ATG GTG ATC ATT ATT GTG GAA GAA CAA AAC TAT TAC GTC AAA CAA CGC CGC AAC GAT CAT CTA GAC GAC CGC AAA CGC ATG CGC CGC CGA CGC CTG CTC CTA GAG GAG GAA GAA GAA GAA CAA GAA AAA GAG GAG GAA GGC GCC GAC GAC GAG GAA TCC GAT GAC GAT GAT ACC CGC ATG CGA GAC GCC GCG AAA GCG GGT GGT GGT GGC GGC GGT GGG GGT GGC CTA GTG GTG GTA CTT GTG GAG GTG GTT GTG CGT GTG GCA TAC TAC TAC TAC TAC TAC TAT TTT TAT TTC GCA TCT ACA TCG GAC TGC CAA TTT GGT TGG TTA CTC TTA TTC TTC CTG TTC TTT TTC
Vibrio_vulnificus                --- --- --- CAA ??? AAA ACC CAA AAG AAA AAA AGC CAA CAT AAT AAA CGT AAC AAC GAA GAA ACG ACG ACC AGC ACC GTT ATC AAC ATT ATC GTG TTA GTG TGC CTC ATG GTA ATC ATT ATT GTA GAA GAA CAA AAC CAT CAA CAG AAA CAA GAG GGC AAC GAC CAT CTC GCC CCG CGT AAA CGC ATG CGT CGT CGC CGC ACC CTG CTC GAA AAT GAA GAG CAA GAG ACC GAA AAA GAT GAG GAG GGC AAC GAT GAT CAA GTG TCC GAA GAC GAT GAT GGT CGC ATG GCG GAA GCC GCC TCT GCG GGA GGC GGT GGG GGT GGC GGA GGT GGC ACC GTG GTG GTG CTA GTG GTG GTG CTG GTG CGC GTG GCC TAC TAC TAT TAT TAC TAC TAT CAA TAT TTT CAT TCC AGC TCG AAC TGT CAA TTT GGC TGG CTC CTG TTA TTC TTC TTG TTT TTT TTT
Vibrio_shilonii                  --- --- --- AAA ??? AAA GTT TCT AAG AAA CGC AGC GAG AAT AAC AAG CGG AAT AAC ACC GAC CGA ACC GAG CGG ACT GTT ATC AAT ATC ATC ATC TTA GTA GTC ATT ATG ATT ATC ATT ATT GTC GAG GCA CAG AAT CAC CAT TCG AAA CAA ACA CAT AAC AGC CAC TTA AGC GAT CGT AAG CGT ATG CGT CGA CAA CGA CTC CTT TTG GAG GAA GAA GAA CAA GAG CAG GAA GAA GAT GAG GAA AAT GAA GAC GAT GAA GAA GCC GAC GAG GAT GAC ACT CGT ATG CCT GAA GCA GCG AGC GCC GGT GGA GGC GGC GGA GGT GGC GGG GGC CTT GTA GTC GCT GTC GTG GAG GTC ATT GTG CGT ATA GTG TAC TAC TAT TAT TAC CAT TAC TTT TAT TTT CGA TCT GAG TCT AAT TGC CAA TTC AGT TGG CTG TTC TTA TTT TTC CTG TTT TTC TTT
Photobacterium_leiognathi        --- --- --- CCA ??? AAA CAG GTG AAA AAA AGA AGC AAC AAC AAT AAA CGT AAT GAA AAC CAA GTC ACC ACT ACC ACA GTG ATC AAC ATT ATT GTA TTA ATT TTA ATT ATG GTG ATC ATT ATT GTG GAG GAA CAA AAC CAT TCA TTG CAA CAA ACC AGT AAT GAC CAT TTG GAG GAT CGT AAA CGT ATG CGC CGT CAA CGT CTG CTA CTT GAA GAA GAA GAA GAA GAA GTG GAA AAA GAT GAA GCG GGG GAA GAT GAT GCG CAA GCA GAA GAT GAT GAT AAT CGC ATG CCA GGT GCG GCG ACG GCC GGT GGT GGA GGT GGG GGT GGT GGT GGC ACT GTG GTG GTA TTA GTG GAA GTG GTG GTG ATT GTA GCG TAC TAC TAC TAC TAC TAC TAC ACC TAC GTG GCT TCA GTA TCG AAT TGT TGT TTT GGT TGG TTA TTG TTA TTT TTC CTG TTT TTT TTC
Vibrio_parahaemolyticus          --- --- --- AAA ??? AAA ACC TCT AAA AAA AGA AGC AAC AAC AAT AAA CGT AAC GAC GAT GCG ACA ACC ATC CAA ACC GTT ATC AAC ATT ATC GTG TTA GTG CAC ATC ATG GTT ATC ATT ATT GTA GAA GAA CAA AAC CAC AGC CAG AAA CAA ACA CGA AAC AGT CAT CTA GAT GAT CGT AAA CGC ATG CGT CGC CGT CGC ATG CTC CTC GAA GGC GAA GAA GAA GAA CAA GAA GAA GAT GAG GAG GGC GGC GAC GAT GAG GAA ACC GAA GAC GAT GAT ACC CGC ATG CGC GAA GCG GCG GCG GCC GGT GGT GGT GGC GGC GGC GGT GGC GGC CTA GTG GTG GTA CTT GTG GAA GTG GTT GTG CGC GTG GCG TAC TAC TAT TAC TAC TAC TAC TTT TAT TTC GCT TCA ATC TCG AAC TGT CAG TTT GGA TGG TTG TTT TTA TTC TTC CTG TTC TTC TTC
Serratia_fonticola               --- --- --- CGC ??? AAA ACG CAA AAA CGG AGA AAC AAC AAT AAC AAA CGT AAC GAT GAC ACC ACC ACC GAA AAT ACC GTT CAC AAC ATC ATT GTA TTA CTG CAC ATT ATG GTA ATC ATT ATT GTT GAA GAG CAA AAC CAC CGT GTG AAA CAA TCC GGC AAT CAG CAT TTG AAA GAC CGT AAA CGT ATG CGT CGC CGC CGC ACC CTG CTC CAA GAC GAA GAG GCC GAA GAG GAA GAA ACC GAG GAG GGC GCC GAC GAT GAA GAA TCC GAC GAC GAT GAT CGC CGT ATG CGG TCG GCG GCC ACC GCC GGG GGC GGC GGC GGG GGC GGC GGC GGC CCC GTG GTC GTA TTA ATC GTT GTG ATT GTG TGT GTG GCG TAC TAC TAC TAT TAT TAC TAC TAT TAC TTC GCC ACG GTC TCC GAC TGT ACC TTT GGC TGG CTT CTG CTG TTC ATG CTG TTC TTT TTC
Photobacterium_aphoticum         --- --- --- CAG ??? AAG ACG TCA AAA AAA AGA AAC AAC AAC AAC AAA CGT AAC GAC GAC GAC TCT ACG ATC CAG ACC GTG ATC AAC ATC ATT GTG TTA GTC CAC ATC ATG GTG ATG ATC ATC GTG GAA GAA CAG AAC CAC TGT GTG AAA CAA AAC CGT CAC GAC CAT CTC AGC GAC CGT AAA CGC ATG CGT CGC CGC CGT CAA CTG CTC GAA AAC GAA GAA GAA GAA CAG GAA AAG GAT GAG GAC GGT GAA GAC GAC GAA GAA CAA GAA GAC GAT GAC ACC CGC ATG CGA GAG GCC GCT GCT GCC GGT GGC GGT GGC GGC GGC GGC GGT GGT ATT GTC GTC GTC TTA GTG GAG GTG ATT GTG CGT GTA GTT TAC TAC TAC TAC TAC TAC TAC TGG TAC TTC GCT TCA ATC TCC AAC TGT CAA TTT GGT TGG CTG CTA CTA TTC TTC CTG TTC TTC TTC
Photobacterium_angustum          --- --- --- CCA ??? AAA CAA GTG AAA AAA AGA AGC AAC AAC AAT AAA CGT AAT GAA AAC CAA GTC ACT ACT ACC ACA GTG ATC AAC ATT ATC GTA TTA ATT TTA ATA ATG GTG ATC ATT ATT GTG GAG GAA CAA AAC CAT TCG TTG CAA CAA ACC AGT AAT GAC CAT TTG GAG GAA CGT AAA CGT ATG CGT CGT CAA CGT ATG CTA CTT GAA GAA GAA GAA AAA GAA GTG GAA AAA GAT GAA GCG GGT GAG GAC GAT GTG CAA GCG GAA GAT GAT GAT AAT CGC ATG CCA GGT GCG GCG ACA GCC GGT GGC GGA GGT GGG GGT GGT GGA GGC ACA GTG GTA GTA TTG GTG GAA GTG GTG GTG ATT GTA GCG TAC TAC TAC TAC TAC TAC TAC ACT TAT GTT GCT TCA GTG TCG AAT TGT AGT TTT GGT TGG TTA TTG TTA TTT TTC CTG TTC TTT TTC
Grimontia_hollisae               --- --- --- AAA ??? AAA ACT TCC AAA AAA AGA AGC AAC AAC AAT AAA CGC AAT GAC GAT GCA ACA ACC ATC CAA ACC GTT ATC AAC ATT ATC GTG TTA GTG CAC ATC ATG GTT ATC ATT ATT GTA GAA GAA CTG CAT CAC TGC CAG AAC CAA AAG CGT CAC AGC CAT CTG GAT GAT CGT AAA CGC ATG CGC CGC CGT CGA ACG CTC CTC GAA AGC GAA GAA GAA GAA CAA GAA AAA GAT GAG GCG GGC GGC GAC GAT GAG GAA ACC GAA GAC GAT GAT ACT CGC ATG CGC GAA GCC GCC GCA GCC GGT GGT GGT GGC GGC GGC GGC GGC GGC CTT GTG GTG GTA CTT GTG GAA GTG GTG GTG CGC GTG GCA TAC TAC TAT TAC TAC TAC TAC TTC TAT TTT GCT TCG ATC TCG AAC TGT CAC TTT GGA TGG TTG TTT TTG TTC TTC CTG TTC TTC TTC
Salmonella_enterica              --- --- --- --- ??? AAA AAA AAA AAA AGT AAG AAT ACC ACT GAT CCG ACC AAC CGT AAA GCG ATT GTT ATT ACT ACC ACT AAG AAC ATT GCC GTT TTC TTA ATC ATT ATG ATT CTG ATA ATT TTT CAA CAG CAG CGG CGT CAT TCG CAA TAT CAG CAG CGA CGG TAT CCA ACT CCC CGC AAG CAT CGT AAA CGC CGT AGC CTT TTT TTA TCT GCG GAG ACA GCA GAA TCA GAA GAA GAT GAG GCG AAT GAT GAC AAC CAA GAA ACA GAT GAT GAT GAT GAT CAG CCC CCC GCA GCG GCT GCG GCG GGC GGA CGA GGC GGA GGA AGT GAC TGC ACA GTT GTC GTT ATA ATT ATC ATC CTG GTA ATC CTG TTT ATT TAT TGT TAT TAT TAC GTT TAT TAC TAT TAC GTG GAG TCG CGC TGT TGC TGC TGC TGG CTC CTA CTG TTT ATA CTG ATT TTT TTT
Morganella_morganii              --- --- --- --- ??? AAA CGC CGC AAA ACC CGC GAT GGC TCT AAT AAA AAA AAC TCA ACT GCC ACC ACC CTC CCG ACT ATA ATC AAT GTC ATT CTG TTT GTG ACC CTC ATG GTG ATT ATC GTG TTT GAG GAG AAT CAG TAT AAA CGT CAT GAT ACC GAG AAA CAC CAT CTG GCC CCT CGC CAG CGT CGC CGT CGG AGT CGG GAT CTT CTG GAA AAT GAA GAA CCC GAA AAT GAG GAG CAG GAG ACG AAA CCG GAC GAT CTC CAG TCC GAA ACT GAT GAT CAG CGT ACC GAT CCG GCC GCA GCG GCC GGG GGT GGA GAT GGC GGG GGT GGT GGT CCG GTG GTG GTC TGC GTG GTA GTG CTT GTG CTG ATT CTG TGG TAC TTC TAC TAT TAC TAT ATC TAC TAT GCT TCG GCA TCT CAG TGT AAA TGT TGC TGG CTG CTG TTA TTT TTC CTG TTT TTC TTC
Aeromonas_hydrophila             --- --- GTG CCG ??? AAG ACG GCT AAG AAG CGC AAC AGC AAC AAC AAG AAG AAC GAC GAG GAG CGC ACC GAG GCC ACC ACC ATC AAC ATC GTC ACC CTG GTG GCA CTG ATG GTG CTC ATC ATC ATC GAG GAA CAG GGC CAC GGC AAC AAG CTG CAG GCA CAG GAC CAC AAA CCC CCC CGC AAA CGC CGC CGC CGG GAC CGC CTG ATC CTG GAG GAC ACC GAA AAC GAG CAG GAG GAG GAC GAG ACC GGG CCG GAC GAC CAA CAG TCG GAG GAC GGC GAC ACC CGG TGC CCG TCA GCC GCC AGC GCC CGC GGT GGC GGC GGT GGG GGG GGT GGC GTC ATC GTC GTG GTC GTT GAG CTG TTG ATC CAG GTG GTG TAC TAC TAC TAC TAC TAC TAC TGG TAT TGG GCC TCC GCC TCC GAG TGC GAG TTC GGC TGG TTG CTG CTG TTC TTC CTC TTC TTC TTC
Aliivibrio_logei                 --- --- --- AAA ??? AAG AGC AAC AAA AAA CGT AAC AAT AAT AAT AAA CGC AAC GAT GAT GAC ATA ACT GTA AAC ACT GTT ATC AAC ATT ATC ATT TTA GTG CAT ATT ATG GTT CTT ATT GTA GTA GAA GAA CAA AAC TAT TGT GTG AGA CAA GAA CGT AAT AAC CAC TTG GAT GAT CGT AAA CGT ATG CGT AAA TCA CGA AAC CTA CTC CAA GAA GAA GAA GAA GAA CAA GAA AAA GAC GAA GAA GGC GGC GAC GAT CAA GAA TCT GAT GAC GAT GAT ACC CGT ATG CGT GAA GCT GCG GCC GCA GGT GGC GGC GGG GGC GGC GGT GGC GGT AGT ATT GTC GTT CTT ATC GTG GTG ATT GTT CAT GTA GCT TAC TAT TAT TAT TAT TAC TAT CAC TAT GTG GCC TCT GTT TCG GAC TGT AAC TTT GGC TGG CTA CTA TTA TTT TTC CTG TTC TTT TTC
Aeromonas_veronii                --- --- GTG CCG ??? AAA ACG GCC AAG AAG CGC AAC AGC AAC AAT AAG AAG AAC GAC GAG GAG CGC ACC GAG GCC ACC ACC ATC AAC ATC GTC ACC CTG GTG ACA CTG ATG GTG CTC ATC ATC ATC GAG GAA CAG GGC CAC GGT AAC AAG CTG GCG GCA CAG GAC CAC AAA CCC CCA CGC AAA CGC CGC CGC CGG GAC CGC CTG ATC CTG GAG AAC ACC GAA AAA GAG CAG GAG GAG GAC GAG ACC GGG CCG GAC GAC CAG CAG TCG GAG GAC GGC GAC ACC CGG TGC CCG TCC GCC GCC AGC GCC CGT GGT GGC GGA GGG GGA GGG GGT GGC GTC ATC GTC GTA GTG GTC GAG GTG TTG ATC CAG GTG GTG TAC TAC TAC TAC TAC TAC TAC TGG TAT TGG GCC TCC GCC TCC GAA TGC GAG TTC GGA TGG CTG TTG CTG TTC TTC CTC TTC TTC TTC
Buttiauxella_gaviniae            --- --- GTG CCG ??? AAG ACG GCC AAG AAG CGC AAC AGC AAC AAC AAG AAG AAC GAC GAG GAG CGC ACC GAG GCC ACA ACC ATC AAC ATC GTC ACC CTG GTG GTC CTG ATG GTG CTC ATC ATC ATC GAG GAA CAG GGC CAC GGC AAC AAG CTG GCG GAA CAG GAC CAC AAG GCC CCC CGC AAA CGC CGC CGC CGA GAC CGC CTG ATC CTG GAG AAC ACC GAA AAC GAG CAG GAG GAG GAC GAG ACC GGG CCG GAC GAC CAG CAG AGC GAG GAC GGC GAC ACC CGG TGC CCG TCA GCA GCC AGC GCC CGT GGT GGC GGC GGG GGG GGG GGT GGC GTC ATC GTC GTG GTG GTC GAG GTG TTG ATC CAG GTG GTG TAC TAC TAC TAC TAC TAC TAC TGG TAT TGG GCT TCC GCC TCC GAG TGC GAG TTC GGC TGG CTG CTG CTG TTC TTC CTC TTC TTC TTC
Aeromonas_piscicola              --- --- GTG CCG ??? AAG ACG GCC AAG AAG CGC AAC AGC AAC AAC AAG AAG AAC GAC GAG GAG CGC ACG GAG GCC ACG ACC ATC AAT ATC GTC ACC CTG GTG GCA CTG ATG GTG CTC ATC ATC ATC GAG GAA CAG GGC CAC GGC AAC AAG CTG GGA GCG CAG GAC CAC AAA GCC CCC CGT AAA CGC CGC CGC CGC GAC CGC CTG ATC CTG GAG AAC ACC GAA AAT GAG CAG GAG GAG GAC GAG ACC GGG CCA GAT GAC CAG CAG AAT GAG GAC GGC GAC ACC CGG TGC CCG TCA GCT GCC AGC GCC CGT GGC GGC GGC GGG GGA GGG GGT GGC GTC ATC GTC GTG GTG GTC GAG CTG TTG ATC CAG GTG GTG TAC TAC TAC TAC TAC TAC TAC TGG TAT TGG GCC TCC GCC TCC GAG TGT GAG TTC GGC TGG CTG CTG CTG TTC TTC CTC TTC TTC TTC
Providencia_stuartii             --- --- --- AAA ??? AAA ACT ACT AAA CGC AAG AGT GAC CAT AAC AAA CGT AAT AAT AAA ACT AAG ACC GAG TCA ACC GTA ATC AAT ATT GTT GTA TTA ATT CAT ATC ATG ATT ATC ATC ATC GTT GAA GAT GAA AAT CAT AAG CTC CGA CAA AGG GAA AAT CAT CAT CTA AGT GAA CGC GGC CGT CGC CGC CGT AGC CGT TTA CTA CTT GAG AAC GAA GAA CAA GAG GGC GAG GAA ACT GAA GAA GGT AAT GAC GAT CAT GCC TCG GAA AAC GAT GAT ATG CGT GCA CAA CCT GCA GCC GAC GCT GGA GGC GGT GGC GGT GGT GGT GGC GGT CCA GTA GTC GTG TTG GTG AAC GTC ATC GTG CAT ATA GCT TAC TAT TAT TAT TAT TAC TAT TTT TAC GTT CAT TCT CAA TCT GAC TGT AAC TTC GGT TGG CTT TTT CTT TTC ATG CTG TTT TTT ATT
Serratia_grimesii                --- --- --- CAG ??? AAA ACG AGT AAA AAA AAA TCA AAC CGT AAC AAA AAA AAT AGT TCT GTG ACA ACT GAG CAG ACC GTT ATT AAC GTT ATA ATT ATC GTC AAA ATT ATG ATC ATC ATT ATC ATT GAA GCC AAC CAG TAT GGG CTT GAG GAG ACT CAG AAT CAT CAC GTT GAT CCG CGT CAG CGC CGG CGT CGA CAG CGT TGG TTA CTT GAA AAC GAA GAA CAA GAG GTG GAG CAG GAT GAA GCC GGC GAA GAT GAT CGC GCG AGC GAT GAA GAC GAT CAT CGT TTT CAG GGC GCT GCT GGC GCC GGT GGG GGG AAT GGC GGA GGG GGC AGC TCG GTT GTG GTA GTA CTG GTG GTC CTG ATT CAT ATG GTT TAC TAT TAT TAT TAT CAC TAT TTT TAT GTT GCC TCA CCA TCG GCA TGT CAG TTT GAA TGG CTG TTC TTA TTT TTC CTG TTT TTG TTT
Hafnia_paralvei                  --- --- --- GCT ??? AAA ATG AGC AAG AAA CGG ACT GAT AGT AAT AAA AAA AAC GGG GAA GAA AAA ACC GAA GGT TGT GTT ATT AAC ATA GTT ATT GTA GTC TCT CTG ATG GTG ATT ATT ATT GTT GAA GCC AAT CAG TAT GTG AGC AAG GAA ACC CAA AAC CAC CAT CTT GCC CCT CGC CAG CGC CGT CGT AGA AAG CGA CTA CTG CTT GCA AAT GAA GAG GCG GAG GTT GAA GAA GAT GAA GAA TGT AAG GAC GAT AAG ACG GCT GAA AAT GAA GAT GAC CGG TTT AGC GGG GCC GCG GGT GCA GGC GGG GGG GAT GGT GGA GGC GGG ACG CCA GTT GTT ATG CTG GTG GAA GTC CTT ATC CAG ATG GCC TAT TAT TAC TAT TAC TAC TAT TAT TAT TAT CCT TCA TCT TCG GCT TGT CAG TTT GCT TGG TTA TTC TTA TTT TTC CTA TTC TTT TTT
Buttiauxella_agrestis            --- --- --- CAC ??? AAA TCC AGC AAA AAA AAG ACC AAA AAC AAC AAA AAA AAC GGT GAA GCC CGG ACC GAA AAC AGT GTT ATT AAC ATT GTT ATT TTA GTC TCG CTT ATG ATT ATT ATC ATC GTT GAG AGC AAC CAA TAT AAG AGC AAG GAA ATG CAC AAC CAC CAT TTA GAT CCA CGC AAG CGC CGC CGC CGG CGC CGC TTA TTA CTT GTG AAT GAA GAG GCT GAG ATG GAG CAG GAT GAG GAT GGT AAT GAC GAC GAA GCC AGC GAA AAT GAA GAT GGG CGG TTT GAC GAA GCG GCA GCA GCT GGC GGG GGC AAT GGC GGG GGC GGT ACG CCT GTT GTC GTC CTC GTG GAG GTG CTT ATC CAT ATC ATC TAC TAT TAT TAT TAT CAC TAT TTT TAT GTT GCT TCG AAT TCG GTG TGT CAG TGT CAG TGG TTG TTC TTA TTT TTC CTG TTC TTT TTC
Serratia_marcescens              --- --- --- CGC ??? AAG ACC AGC AAA AAA AAA TCC GGC CGC AAC AAG AAG AAT AGC GTC GCG AAG ACG GAG CAG ACC ACG ATC AAC ATC GTG ATT CTC GTG ACA GTC ATG GTC ATC ATC ATC ATC GAG GAG AAC CTG CAT GGC CGC AGC GAG ACG GAA AAC CAC CAC GTT GAC CCG CGC CAG CGC CGG CGC CGC CAG CGC TGG TTA CTC GAG GCC GAA GAA AAA GAG GCG GAG CAG GAC GAG GCG GGT GAT GAC GAC CGG AGC CGG GAA GAA GAC GAC CAC CAC TGC AAG GGT GCC GCT GGC GCG GGC GGC GGC AAC GGC GGG GGC GGC AGC ACG GTG GTG GTA GTC GTG GTG GTC CTG ATT CGC ATG GCG TAC TAT TAT TAT TAC CAC TAT TTT TAT GTG CCC TCG GCC TCG AGC TGC GAA TTC GAA TGG CTG TTC CTG TTT TTT CTG TTC CTG TTC
Hafnia_alvei                     --- --- --- GAG ??? AAA ACG CGT AAG CAG AGG ACC CAA AAT AAT AAA AAA AAC GCG GAT ACG GCT ACC GAA CCG AGT GTA ATT AAC ATA GTT ATT TTT GTT GGG CTT ATG GTT ATT ATC ATT ATT GAA GCC AAC CAG TAT AAA CGT GCT GAG ACT CAG AAT CAT CAT CTT AAT CCT CGG CAG CGT CGC CGT CGC CGC AGG TTA CTT TTA GAG AAT GAG GAG GCG GAG ATT GAG CAG GAT GAG GAC GGT AAA GAT GAT TCC GCT AAC GAA AAT GAG GAT GTA CGA TTT GGC GAG GCG GCA GTA GCT GGC GGC GGG AAT GGC GGA GGA GGC ACG CCA ATT GTG GTG CTC GTG GAA GTT CTC ATT TAT ATG GTT TAT TAT TAT TAT TAT CGC TAT TTT TAT ATT GCC TCG TCT TCG GAG TGT CGA TTC CAA TGG TTA TAT TTA TTC TTC CTG TTT TTT TTT
Tessaracoccus_lapidicaptus       --- --- --- CTG ??? CAG GCG ACC GCC CAC CGG AGC CCC TCG AAC AGG AAG GCC ACC AGC GAC CGG ACC ACC GCC ACC ACC CGC ATC ATC GTC ATC TTC CTG CTC GCG ATG GTG CTC CTC ATC CTC GTC GCA GGC TCG TAC CCC GAC ACC GCT GCC GAG CGG GAC GTG CAC CGT GAG CGT CGC CGG CGC CGC CGC AGC CGC GAA CTG ATG GAG GCC CTC GAG GAC CAG GCC GAA GAG ATG GAG TCC GCG CCG GAC GAT CTC GGT GAG GAC GAC GGC GAC GCG GGC ACC GAC CGC GCG GCC GAT GCA GCG GGG GAG GGC GGA GGC GGG GGG GCC GCC GTC GTC GCG ATT GTG GTC GTG ACC CTG GTC CGC CTG TCG GCG CTC TAC TAC GCC AGC CCC TAC GTG CCC TCC GCT TCC GCG ACC CCG GTC CCC TGG CTG TTC CAC CTG TTC CTC CTC CTC ATC
Trueperella_pyogenes             --- --- --- CTG ??? AAA TAC AAA GTC CAC GAC ACT GAC TCA AAC CGG CGT AAC GGA CCT GGA CGC ACT GTT GTC TCG ACC TTG ATT GTT GTC GTG TTT ATT CTT TGC GTG ATT ATC ATC ATT CAA CTC AGC GCG CTT TAT GAC AAC AGG CAG GAA GCC AGG GAT ATC CCA AAG AGA AGA TCG CGA CGG CGG CGT TCG ACC AGC CTC GTC CAA AAT CTT GAG GCA GAA CGA GAG GAA GCG GGC GAT GCT GGC GAT GAC AGA ACA GCG GAA TCG GGA GAC ACG GGT AGT GGC GAG TCC GCT GAA GCA GGC GGC GAA GGA GGG GGC GGC GGT AGA AGG GCA GTG --- TTA GTT ACG GTT ATT AGC ACA TTG GGG GTC TAC TTC TAT TAT TAT GGC TTG TAC ATC GCC AGC TCC TCA GGT ACA TGT GTT GGG TGG CTA TTC CTC TTC TTC TTG CAC TTC GTT
Gardnerella_vaginalis            --- --- --- GTT ??? AAA TAT GTA TTG CAG GTA AAT TCT TGT AAT AAA CGA AAG CAA GAT AAT ACT ACG ACA GTT AGC ACA CGT ATG ATA GTT ATT TAT ATT CTG GTC ATG ATT TTA ATT CTT TGT GCT AGC GGT AAG TAC CAT GTA TCT GAA CTA ACT TCG TCT TTG CCT GAT AAT AGG GAA CGT TGG CGA AAA AGT CGT CGG GCT GTA GAG GGT TTG GAA GAA GAA GAA GAG GAG ACT GAT TCA TTG AAG GAT GAT CAG CAT GGG GAT AAC GGT GAT GAA AAT GCT TAT AAA GCT GCG TGC GCT GGA GGT AGT GAT GGC GGT GGT GGG TTT CCA GAG GTA GGC TTA GCA GTT ATG ACT CAG GTT ATT CTT TCT TAT ATA TTT TAT TTT AGC TAT TAT ATT CGC TCT CGA TCT GGA TTT TCT GTT CAT TGG TTA TTC GTT TTT TTC ATT CAA TTT ATA
Bifidobacterium_breve            GGT GTG --- CTC ??? AAA GCC GAT GTA CGC CGC AGC TCC CGT AAT AAA CGC CAA ACT CCG GCA CCA ACG GTC GCT TCG ACC CGA GAA CTC GTG CTA TAC ATC AAC TCG ATG GTG CTG ATT ATT GGA TTA GAC GGC ATG TAT CCT ACC CCG ATG CGG CCG CAC TGC CTC CCC CCG TTG CGC GAT CGA TGG CGG CGC AGC CGC CGT GTC ATC GTA AGG GTT GAG GTC GAA GGT CAG GAA ACG TAT GAA GCA ACC GAT GAT GTC GTA ACG GAA GAC GGG GAC GAT TCT GCG GTG GAT CGC GCG GCG GCC GGC GAG GTG GAC GGG GAG GGG GGC TTC CCA ACC GTC GCC GTG GTG GCC TCG GCG GTG TGC GGT CTG CCC TCG TTG TTC TAC ATG ACG TGG TAC GTC GCA TCG GGC TCG CAT TGC GAA ATG GCC TGG TTG TTT TTG TTC TTC CTG CAC TAT ATT



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    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1

CODONML (in paml version 4.8a, August 2014)  /Users/barry/Dropbox/Manuscripts/InPreparation/PTME5/Downloads/MacOSX/Chapter17/ebgC.pam
Model: One dN/dS ratio for branches, 
Codon frequency model: F3x4
ns =  40  ls = 154

Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT   3   4   4   4   3   3 | Ser TCT   1   1   1   0   3   0 | Tyr TAT   7   8   8   7   6   6 | Cys TGT   0   3   3   3   1   1
    TTC   2   1   1   2   1   3 |     TCC   2   3   3   2   1   1 |     TAC   4   3   3   3   5   3 |     TGC   4   1   1   1   3   3
Leu TTA   3   1   1   1   1   1 |     TCA   1   0   0   0   0   0 | *** TAA   0   0   0   0   0   0 | *** TGA   0   0   0   0   0   0
    TTG   1   0   0   0   1   1 |     TCG   0   0   0   2   0   3 |     TAG   0   0   0   0   0   0 | Trp TGG   1   1   1   1   1   1
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT   0   0   0   0   0   0 | Pro CCT   1   0   0   0   0   1 | His CAT   4   4   4   4   4   2 | Arg CGT   2   3   3   3   2   2
    CTC   1   2   2   2   3   4 |     CCC   0   0   0   0   1   0 |     CAC   2   1   1   2   3   3 |     CGC   4   5   5   5   5   6
    CTA   1   0   0   1   0   0 |     CCA   0   1   1   1   0   0 | Gln CAA   4   6   6   5   2   4 |     CGA   1   0   0   0   2   0
    CTG   1   4   4   3   4   3 |     CCG   1   0   0   0   0   1 |     CAG   5   4   4   5   6   6 |     CGG   1   0   0   1   1   1
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT   5   7   6   5   6   5 | Thr ACT   2   0   0   0   0   2 | Asn AAT   2   4   4   4   2   5 | Ser AGT   0   0   0   0   0   1
    ATC   8   5   5   5   3   4 |     ACC   4   5   5   5   5   4 |     AAC   4   3   3   3   5   1 |     AGC   0   1   1   1   0   2
    ATA   0   1   1   1   0   2 |     ACA   2   1   0   1   0   0 | Lys AAA   6   6   7   8   7   5 | Arg AGA   0   0   0   0   0   2
Met ATG   1   2   2   2   2   2 |     ACG   0   0   0   0   2   1 |     AAG   2   3   2   0   0   1 |     AGG   1   1   1   1   1   1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT   4   1   2   2   3   2 | Ala GCT   0   0   0   2   2   3 | Asp GAT   5   6   7   6   7   6 | Gly GGT   2   4   3   4   3   2
    GTC   4   4   4   4   4   4 |     GCC   2   4   4   4   6   3 |     GAC   4   4   3   4   3   4 |     GGC   3   1   2   2   1   4
    GTA   1   2   2   2   2   0 |     GCA   0   3   3   1   1   1 | Glu GAA  12  10   9   8  12   8 |     GGA   1   3   3   3   2   3
    GTG   4   4   4   4   5   7 |     GCG   6   3   4   2   1   1 |     GAG   3   3   4   6   1   3 |     GGG   3   1   1   0   3   0
--------------------------------------------------------------------------------------------------------------------------------------

--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT   0   5   5   4   0   3 | Ser TCT   0   0   0   0   0   0 | Tyr TAT   2   3   3   2   4   4 | Cys TGT   2   0   0   0   1   1
    TTC   5   1   1   1   5   2 |     TCC   1   2   2   1   2   1 |     TAC   7   6   6   8   4   6 |     TGC   2   4   4   4   4   2
Leu TTA   0   1   1   1   0   0 |     TCA   1   0   0   1   0   1 | *** TAA   0   0   0   0   0   0 | *** TGA   0   0   0   0   0   0
    TTG   0   0   0   0   1   0 |     TCG   1   1   1   1   2   3 |     TAG   0   0   0   0   0   0 | Trp TGG   1   1   1   1   1   1
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT   0   0   0   0   2   3 | Pro CCT   1   0   0   0   1   0 | His CAT   4   2   2   0   4   6 | Arg CGT   1   0   0   0   3   1
    CTC   1   3   3   2   2   1 |     CCC   1   0   0   0   1   1 |     CAC   1   2   2   6   1   0 |     CGC   8   8   8   8   5   8
    CTA   0   1   1   0   0   0 |     CCA   1   0   0   0   1   0 | Gln CAA   1   2   1   0   2   1 |     CGA   0   1   1   0   0   1
    CTG   6   4   4   6   5   4 |     CCG   0   2   2   3   0   1 |     CAG   8   6   7   9   7   8 |     CGG   1   1   1   0   1   0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT   5   3   3   4   4   5 | Thr ACT   0   0   0   0   1   0 | Asn AAT   0   5   4   2   0   4 | Ser AGT   0   1   1   0   1   0
    ATC   7   7   7   6   4   6 |     ACC   8   4   4   4   5   6 |     AAC   4   3   3   3   7   3 |     AGC   2   1   1   4   1   3
    ATA   0   0   0   0   1   0 |     ACA   0   0   0   0   0   1 | Lys AAA   5   6   6   3   6   6 | Arg AGA   1   1   1   2   2   0
Met ATG   2   2   2   2   1   1 |     ACG   1   3   3   2   1   1 |     AAG   2   1   2   4   0   0 |     AGG   0   0   0   1   0   0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT   0   3   3   1   1   1 | Ala GCT   1   0   0   0   1   0 | Asp GAT   6   7   7   3   5   6 | Gly GGT   3   2   1   1   3   3
    GTC   3   2   4   3   3   3 |     GCC   1   5   4   4   4   5 |     GAC   6   4   4   8   5   2 |     GGC   4   3   4   5   4   4
    GTA   2   1   1   0   1   2 |     GCA   0   0   0   0   0   0 | Glu GAA   7   9  10   3   8   6 |     GGA   1   1   1   1   2   0
    GTG   8   9   8  10  10   6 |     GCG   5   3   3   4   4   4 |     GAG   7   3   2   8   4   9 |     GGG   1   3   3   2   0   2
--------------------------------------------------------------------------------------------------------------------------------------

--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT   0   5   3   5   5   4 | Ser TCT   0   1   1   1   3   0 | Tyr TAT   1   2   3   4   3   0 | Cys TGT   1   1   0   1   0   2
    TTC   6   2   5   2   4   2 |     TCC   1   0   2   2   0   0 |     TAC   9   7   7   4   4   8 |     TGC   1   1   1   1   1   0
Leu TTA   0   3   3   2   3   5 |     TCA   1   1   0   0   0   2 | *** TAA   0   0   0   0   0   0 | *** TGA   0   0   0   0   0   0
    TTG   0   1   0   1   1   3 |     TCG   1   1   1   1   1   1 |     TAG   0   0   0   0   0   0 | Trp TGG   1   1   1   1   1   1
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT   2   1   1   0   2   1 | Pro CCT   0   0   0   0   1   0 | His CAT   0   1   1   4   3   2 | Arg CGT   3   6   2   4   5   5
    CTC   0   1   2   4   1   0 |     CCC   0   0   0   0   0   0 |     CAC   4   2   1   0   2   0 |     CGC   9   5   8   5   1   2
    CTA   2   2   3   1   0   1 |     CCA   0   0   0   0   0   2 | Gln CAA   3   6   5  10   4   6 |     CGA   0   1   2   0   4   0
    CTG   5   2   2   3   2   2 |     CCG   0   0   0   1   0   0 |     CAG   0   0   0   1   2   1 |     CGG   1   0   0   0   2   0
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT   3   1   3   3   5   7 | Thr ACT   0   4   3   0   2   2 | Asn AAT   2   4   1   2   6   5 | Ser AGT   0   0   0   0   1   1
    ATC   5   5   4   3   5   2 |     ACC   6   2   2   6   2   4 |     AAC   6   6   7   7   3   5 |     AGC   1   1   0   3   4   1
    ATA   0   1   0   0   1   0 |     ACA   0   3   1   0   1   1 | Lys AAA   5   8   8   7   4   6 | Arg AGA   0   0   1   0   0   1
Met ATG   3   3   3   3   3   3 |     ACG   0   0   0   2   0   1 |     AAG   2   0   0   1   3   0 |     AGG   0   0   0   0   0   0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT   3   5   2   1   2   0 | Ala GCT   1   1   0   0   1   1 | Asp GAT   5   9   5   5   4   7 | Gly GGT   3   6   6   4   2   8
    GTC   2   2   1   0   5   1 |     GCC   4   1   2   4   2   1 |     GAC   7   2   9   2   4   1 |     GGC   9   5   4   6   4   1
    GTA   3   4   1   2   2   4 |     GCA   0   2   2   0   2   1 | Glu GAA  11  14  10   9  10  13 |     GGA   0   0   0   2   2   1
    GTG   7   4  10  11   3  12 |     GCG   3   1   2   2   1   5 |     GAG   7   2   6   5   9   2 |     GGG   0   0   1   1   1   2
--------------------------------------------------------------------------------------------------------------------------------------

--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT   3   2   1   3   3   6 | Ser TCT   1   0   1   0   0   1 | Tyr TAT   2   3   0   1   2   7 | Cys TGT   1   2   2   1   1   2
    TTC   6   4   6   3   6   1 |     TCC   0   3   1   0   1   0 |     TAC   6   6   8   7   6   3 |     TGC   0   0   0   0   1   4
Leu TTA   2   2   2   4   1   2 |     TCA   1   0   2   1   0   1 | *** TAA   0   0   0   0   0   0 | *** TGA   0   0   0   0   0   0
    TTG   1   1   0   4   2   0 |     TCG   1   1   0   2   2   2 |     TAG   0   0   0   0   0   0 | Trp TGG   1   1   2   1   1   1
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT   1   1   0   1   2   1 | Pro CCT   0   0   0   0   0   0 | His CAT   1   1   1   2   2   2 | Arg CGT   4   6   6   6   3   4
    CTC   2   1   2   0   2   1 |     CCC   0   1   0   0   0   3 |     CAC   2   3   3   0   4   0 |     CGC   6   5   4   1   7   3
    CTA   2   0   2   1   0   1 |     CCA   0   0   0   2   0   1 | Gln CAA   4   4   4   7   3   3 |     CGA   1   0   1   0   1   2
    CTG   1   5   3   1   3   5 |     CCG   0   0   0   0   0   1 |     CAG   2   1   4   0   1   5 |     CGG   0   2   0   0   0   2
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT   3   5   3   5   3   9 | Thr ACT   0   0   0   3   2   4 | Asn AAT   1   3   0   5   2   2 | Ser AGT   1   0   0   2   0   2
    ATC   6   3   7   3   6   4 |     ACC   5   8   2   2   3   3 |     AAC   7   6  10   5   5   3 |     AGC   2   0   1   1   3   1
    ATA   0   0   0   1   0   3 |     ACA   2   0   0   3   1   3 | Lys AAA   7   6   5   7   7   6 | Arg AGA   1   1   1   1   1   0
Met ATG   4   4   4   4   3   1 |     ACG   0   2   2   0   1   0 |     AAG   0   0   2   0   1   3 |     AGG   0   0   0   0   0   0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT   3   3   1   1   2   5 | Ala GCT   1   0   3   1   1   1 | Asp GAT   7   4   2   5   7   8 | Gly GGT   4   0   6   7   3   0
    GTC   0   2   4   1   0   1 |     GCC   1   5   2   1   3   1 |     GAC   3   7  10   2   3   2 |     GGC   8  10   5   2   8   2
    GTA   2   3   1   4   2   1 |     GCA   0   0   0   0   3   2 | Glu GAA  13   8  12  12  12   4 |     GGA   1   0   0   2   1   3
    GTG   8   5   8  12   9   1 |     GCG   5   2   0   5   1   6 |     GAG   3   5   3   3   2   3 |     GGG   0   2   0   1   0   0
--------------------------------------------------------------------------------------------------------------------------------------

--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT   4   0   3   0   0   0 | Ser TCT   2   0   2   0   0   0 | Tyr TAT   4   1   7   1   1   1 | Cys TGT   2   0   2   0   0   1
    TTC   4   6   3   6   6   6 |     TCC   1   2   0   3   2   2 |     TAC   4   7   2   7   7   7 |     TGC   2   2   0   2   2   1
Leu TTA   1   0   2   0   0   0 |     TCA   1   1   1   0   1   1 | *** TAA   0   0   0   0   0   0 | *** TGA   0   0   0   0   0   0
    TTG   0   2   1   2   1   1 |     TCG   1   1   1   1   0   0 |     TAG   0   0   0   0   0   0 | Trp TGG   2   3   1   3   3   3
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT   2   0   2   0   0   0 | Pro CCT   1   0   0   0   0   0 | His CAT   2   0   2   0   0   0 | Arg CGT   4   0   7   1   1   2
    CTC   3   2   1   2   2   2 |     CCC   1   2   0   1   1   1 |     CAC   1   2   2   2   2   2 |     CGC   5   8   1   7   7   7
    CTA   0   0   3   0   0   0 |     CCA   0   0   0   1   0   1 | Gln CAA   0   1   5   0   0   0 |     CGA   0   0   1   0   1   0
    CTG   8   8   1   7   8   9 |     CCG   4   3   0   3   3   2 |     CAG   6   6   0   6   6   6 |     CGG   2   2   0   2   1   1
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT   3   0   6   0   0   0 | Thr ACT   3   0   2   0   0   0 | Asn AAT   5   0   4   1   0   3 | Ser AGT   1   0   1   0   0   0
    ATC   3   8   3   8   8   8 |     ACC   6   7   1   7   6   5 |     AAC   1   7   9   6   8   6 |     AGC   0   2   1   2   3   2
    ATA   1   0   1   0   0   0 |     ACA   0   0   0   1   1   0 | Lys AAA   8   2   7   4   1   2 | Arg AGA   0   0   1   0   0   0
Met ATG   1   1   3   1   1   1 |     ACG   1   1   0   1   1   3 |     AAG   0   6   1   5   7   6 |     AGG   0   0   0   0   0   0
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT   0   1   5   0   0   0 | Ala GCT   1   1   2   0   1   1 | Asp GAT   8   0   8   0   0   1 | Gly GGT   4   3   3   3   2   1
    GTC   2   4   1   4   5   4 |     GCC   4   6   2   7   6   7 |     GAC   1   9   5   8   8   7 |     GGC   2   7   8   4   7   8
    GTA   1   0   4   1   0   0 |     GCA   2   2   1   1   1   1 | Glu GAA   5   2  13   3   3   2 |     GGA   1   0   0   3   0   2
    GTG   8   6   5   7   8   7 |     GCG   1   0   1   1   1   1 |     GAG   6  13   0  12  13  13 |     GGG   2   3   1   3   4   3
--------------------------------------------------------------------------------------------------------------------------------------

--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT   4   6   5   4   3   6 | Ser TCT   2   1   2   0   0   1 | Tyr TAT   5   7   8   7   5  10 | Cys TGT   1   1   3   2   0   1
    TTC   2   2   3   4   4   3 |     TCC   0   0   0   1   1   1 |     TAC   3   1   3   1   2   0 |     TGC   0   0   0   0   2   0
Leu TTA   2   2   2   5   1   4 |     TCA   1   2   1   0   0   0 | *** TAA   0   0   0   0   0   0 | *** TGA   0   0   0   0   0   0
    TTG   1   1   0   1   0   0 |     TCG   1   2   1   3   2   2 |     TAG   0   0   0   0   0   0 | Trp TGG   1   2   1   1   2   1
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT   3   2   3   3   0   3 | Pro CCT   1   0   2   1   0   1 | His CAT   8   3   1   2   1   2 | Arg CGT   5   5   2   0   0   4
    CTC   1   0   0   1   2   2 |     CCC   0   0   0   0   1   0 |     CAC   0   2   1   4   5   0 |     CGC   4   2   2   6   9   4
    CTA   2   0   2   0   0   0 |     CCA   1   1   1   1   0   1 | Gln CAA   4   1   1   1   0   2 |     CGA   1   1   1   0   0   2
    CTG   1   4   3   1   6   1 |     CCG   0   1   0   0   1   1 |     CAG   0   9   4   3   4   5 |     CGG   0   1   2   3   3   1
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT   4   6   5   5   2   9 | Thr ACT   4   2   1   0   0   1 | Asn AAT   6   3   4   5   1   7 | Ser AGT   2   2   1   1   0   1
    ATC   6   4   1   5   6   1 |     ACC   2   1   2   2   2   2 |     AAC   5   5   3   7   5   4 |     AGC   1   2   3   4   6   0
    ATA   1   1   1   0   0   1 |     ACA   0   1   0   0   1   0 | Lys AAA   5   7   5   6   4   5 | Arg AGA   0   0   1   0   0   0
Met ATG   3   2   4   3   2   2 |     ACG   0   1   2   1   4   3 |     AAG   3   0   5   4   5   1 |     AGG   1   0   0   0   0   2
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT   3   6   6   5   1   5 | Ala GCT   2   2   4   3   1   4 | Asp GAT   4   6   5   4   1   5 | Gly GGT   7   1   3   3   2   1
    GTC   2   2   2   3   5   0 |     GCC   2   4   4   2   3   2 |     GAC   4   1   2   3   6   1 |     GGC   5   5   2   4   9   5
    GTA   3   2   1   0   1   3 |     GCA   2   1   2   2   0   1 | Glu GAA  10   8  13   8   7   4 |     GGA   1   1   1   0   0   2
    GTG   3   4   3   4   7   3 |     GCG   0   1   2   1   5   3 |     GAG   4   5   2   6   8  11 |     GGG   0   4   5   3   1   2
--------------------------------------------------------------------------------------------------------------------------------------

------------------------------------------------------------------------------------------------------
Phe TTT   0   1   6   1 | Ser TCT   0   0   7   1 | Tyr TAT   0   4   7   3 | Cys TGT   0   1   2   0
    TTC   3   5   2   4 |     TCC   3   2   0   1 |     TAC   4   3   1   3 |     TGC   0   1   1   3
Leu TTA   0   1   3   1 |     TCA   0   2   1   0 | *** TAA   0   0   0   0 | *** TGA   0   0   0   0
    TTG   0   4   4   4 |     TCG   3   4   1   6 |     TAG   0   0   0   0 | Trp TGG   1   1   2   3
------------------------------------------------------------------------------------------------------
Leu CTT   0   3   2   0 | Pro CCT   0   1   1   1 | His CAT   0   0   3   1 | Arg CGT   2   2   3   2
    CTC  10   3   0   3 |     CCC   5   0   0   2 |     CAC   3   2   0   2 |     CGC   8   1   1   7
    CTA   0   1   1   1 |     CCA   0   1   1   2 | Gln CAA   0   2   2   1 |     CGA   0   2   3   2
    CTG   7   1   1   3 |     CCG   2   0   0   4 |     CAG   2   1   3   1 |     CGG   4   3   1   2
------------------------------------------------------------------------------------------------------
Ile ATT   1   5   7   3 | Thr ACT   0   2   4   1 | Asn AAT   0   1   5   1 | Ser AGT   0   1   2   0
    ATC   5   4   0   2 |     ACC  10   2   0   4 |     AAC   1   3   1   1 |     AGC   4   4   3   2
    ATA   0   0   3   0 |     ACA   0   3   2   0 | Lys AAA   0   2   4   2 | Arg AGA   0   4   0   0
Met ATG   3   0   3   5 |     ACG   0   2   1   4 |     AAG   1   1   3   0 |     AGG   1   3   1   1
------------------------------------------------------------------------------------------------------
Val GTT   0   6   7   1 | Ala GCT   2   2   5   1 | Asp GAT   2   3   8   6 | Gly GGT   1   3   6   3
    GTC   7   5   1   6 |     GCC  10   2   0   5 |     GAC   9   5   0   4 |     GGC   5   8   2   4
    GTA   0   0   5   3 |     GCA   2   3   1   3 | Glu GAA   2   6   7   6 |     GGA   1   4   2   1
    GTG   5   3   0   8 |     GCG   9   3   1   4 |     GAG   8   3   4   3 |     GGG   3   3   2   3
------------------------------------------------------------------------------------------------------

Codon position x base (3x4) table for each sequence.

#1: Escherichia_coli
position  1:    T:0.19595    C:0.18919    A:0.25000    G:0.36486
position  2:    T:0.26351    C:0.14865    A:0.43243    G:0.15541
position  3:    T:0.25676    C:0.32432    A:0.21622    G:0.20270
Average         T:0.23874    C:0.22072    A:0.29955    G:0.24099

#2: Citrobacter_amalonaticus
position  1:    T:0.17568    C:0.20270    A:0.26351    G:0.35811
position  2:    T:0.25676    C:0.14189    A:0.43919    G:0.16216
position  3:    T:0.30405    C:0.29054    A:0.22973    G:0.17568
Average         T:0.24550    C:0.21171    A:0.31081    G:0.23198

#3: Citrobacter_braakii
position  1:    T:0.17568    C:0.20270    A:0.25000    G:0.37162
position  2:    T:0.25676    C:0.14189    A:0.43919    G:0.16216
position  3:    T:0.30405    C:0.29054    A:0.22297    G:0.18243
Average         T:0.24550    C:0.21171    A:0.30405    G:0.23874

#4: Citrobacter_freundii
position  1:    T:0.17568    C:0.21622    A:0.24324    G:0.36486
position  2:    T:0.25676    C:0.13514    A:0.43919    G:0.16892
position  3:    T:0.29730    C:0.30405    A:0.21622    G:0.18243
Average         T:0.24324    C:0.21847    A:0.29955    G:0.23874

#5: Citrobacter_koseri
position  1:    T:0.17568    C:0.22297    A:0.22297    G:0.37838
position  2:    T:0.25676    C:0.14865    A:0.42568    G:0.16892
position  3:    T:0.28378    C:0.33108    A:0.19595    G:0.18919
Average         T:0.23874    C:0.23423    A:0.28153    G:0.24550

#6: Klebsiella_oxytoca
position  1:    T:0.17568    C:0.22297    A:0.25676    G:0.34459
position  2:    T:0.27703    C:0.14189    A:0.38514    G:0.19595
position  3:    T:0.27703    C:0.33108    A:0.17568    G:0.21622
Average         T:0.24324    C:0.23198    A:0.27252    G:0.25225

#7: Yokenella_regensburgei
position  1:    T:0.14865    C:0.22973    A:0.25000    G:0.37162
position  2:    T:0.26351    C:0.14865    A:0.40541    G:0.18243
position  3:    T:0.16892    C:0.41216    A:0.12838    G:0.29054
Average         T:0.19369    C:0.26351    A:0.26126    G:0.28153

#8: Enterobacter_aerogenes
position  1:    T:0.16216    C:0.21622    A:0.25000    G:0.37162
position  2:    T:0.28378    C:0.13514    A:0.39865    G:0.18243
position  3:    T:0.20946    C:0.37162    A:0.15541    G:0.26351
Average         T:0.21847    C:0.24099    A:0.26802    G:0.27252

#9: Klebsiella_pneumoniae
position  1:    T:0.16216    C:0.21622    A:0.25000    G:0.37162
position  2:    T:0.29054    C:0.12838    A:0.39865    G:0.18243
position  3:    T:0.19595    C:0.38514    A:0.15541    G:0.26351
Average         T:0.21622    C:0.24324    A:0.26802    G:0.27252

#10: Enterobacter_lignolyticus
position  1:    T:0.16216    C:0.22973    A:0.25000    G:0.35811
position  2:    T:0.27027    C:0.13514    A:0.39865    G:0.19595
position  3:    T:0.11486    C:0.45270    A:0.07432    G:0.35811
Average         T:0.18243    C:0.27252    A:0.24099    G:0.30405

#11: Trabulsiella_odontotermitis
position  1:    T:0.16216    C:0.23649    A:0.22973    G:0.37162
position  2:    T:0.27027    C:0.15541    A:0.38514    G:0.18919
position  3:    T:0.20946    C:0.38514    A:0.15541    G:0.25000
Average         T:0.21396    C:0.25901    A:0.25676    G:0.27027

#12: Enterobacter_hormaechei
position  1:    T:0.16216    C:0.23649    A:0.24324    G:0.35811
position  2:    T:0.25000    C:0.16216    A:0.41216    G:0.17568
position  3:    T:0.25000    C:0.35811    A:0.12162    G:0.27027
Average         T:0.22072    C:0.25225    A:0.25901    G:0.26802

#13: Photobacterium_gaetbulicola
position  1:    T:0.14765    C:0.19463    A:0.22148    G:0.43624
position  2:    T:0.27517    C:0.11409    A:0.41611    G:0.19463
position  3:    T:0.16107    C:0.46980    A:0.16779    G:0.20134
Average         T:0.19463    C:0.25951    A:0.26846    G:0.27740

#14: Photobacterium_damselae
position  1:    T:0.17450    C:0.18121    A:0.25503    G:0.38926
position  2:    T:0.28188    C:0.11409    A:0.42282    G:0.18121
position  3:    T:0.31544    C:0.28188    A:0.30201    G:0.10067
Average         T:0.25727    C:0.19239    A:0.32662    G:0.22371

#15: Vibrio_harveyi 
position  1:    T:0.18243    C:0.18243    A:0.22297    G:0.41216
position  2:    T:0.29054    C:0.10811    A:0.42568    G:0.17568
position  3:    T:0.20946    C:0.37162    A:0.24324    G:0.17568
Average         T:0.22748    C:0.22072    A:0.29730    G:0.25450

#16: Vibrio_vulnificus
position  1:    T:0.16779    C:0.22148    A:0.24832    G:0.36242
position  2:    T:0.27517    C:0.12752    A:0.40940    G:0.18792
position  3:    T:0.22819    C:0.32886    A:0.22148    G:0.22148
Average         T:0.22371    C:0.22595    A:0.29306    G:0.25727

#17: Vibrio_shilonii
position  1:    T:0.17450    C:0.19463    A:0.26846    G:0.36242
position  2:    T:0.29530    C:0.10738    A:0.40940    G:0.18792
position  3:    T:0.30201    C:0.28188    A:0.22148    G:0.19463
Average         T:0.25727    C:0.19463    A:0.29978    G:0.24832

#18: Photobacterium_leiognathi
position  1:    T:0.18792    C:0.14765    A:0.26174    G:0.40268
position  2:    T:0.31544    C:0.14094    A:0.37584    G:0.16779
position  3:    T:0.30201    C:0.18792    A:0.28859    G:0.22148
Average         T:0.26846    C:0.15884    A:0.30872    G:0.26398

#19: Vibrio_parahaemolyticus
position  1:    T:0.16779    C:0.17450    A:0.26174    G:0.39597
position  2:    T:0.29530    C:0.11409    A:0.38926    G:0.20134
position  3:    T:0.22148    C:0.36242    A:0.24161    G:0.17450
Average         T:0.22819    C:0.21700    A:0.29754    G:0.25727

#20: Serratia_fonticola
position  1:    T:0.16779    C:0.20134    A:0.25503    G:0.37584
position  2:    T:0.27517    C:0.14765    A:0.38255    G:0.19463
position  3:    T:0.20134    C:0.42953    A:0.16107    G:0.20805
Average         T:0.21477    C:0.25951    A:0.26622    G:0.25951

#21: Photobacterium_aphoticum
position  1:    T:0.16779    C:0.20134    A:0.24832    G:0.38255
position  2:    T:0.29530    C:0.08725    A:0.42953    G:0.18792
position  3:    T:0.17450    C:0.43624    A:0.20134    G:0.18792
Average         T:0.21253    C:0.24161    A:0.29306    G:0.25280

#22: Photobacterium_angustum
position  1:    T:0.18121    C:0.14094    A:0.28188    G:0.39597
position  2:    T:0.32215    C:0.13423    A:0.37584    G:0.16779
position  3:    T:0.28859    C:0.18792    A:0.30201    G:0.22148
Average         T:0.26398    C:0.15436    A:0.31991    G:0.26174

#23: Grimontia_hollisae
position  1:    T:0.17450    C:0.18792    A:0.25503    G:0.38255
position  2:    T:0.29530    C:0.12081    A:0.38255    G:0.20134
position  3:    T:0.22148    C:0.38926    A:0.21477    G:0.17450
Average         T:0.23043    C:0.23266    A:0.28412    G:0.25280

#24: Salmonella_enterica
position  1:    T:0.20270    C:0.22973    A:0.29730    G:0.27027
position  2:    T:0.28378    C:0.19595    A:0.34459    G:0.17568
position  3:    T:0.36486    C:0.21622    A:0.21622    G:0.20270
Average         T:0.28378    C:0.21396    A:0.28604    G:0.21622

#25: Morganella_morganii
position  1:    T:0.18919    C:0.26351    A:0.22297    G:0.32432
position  2:    T:0.27703    C:0.19595    A:0.34459    G:0.18243
position  3:    T:0.31081    C:0.27027    A:0.13514    G:0.28378
Average         T:0.25901    C:0.24324    A:0.23423    G:0.26351

#26: Aeromonas_hydrophila
position  1:    T:0.16667    C:0.22667    A:0.22667    G:0.38000
position  2:    T:0.25333    C:0.17333    A:0.37333    G:0.20000
position  3:    T:0.04000    C:0.54000    A:0.05333    G:0.36667
Average         T:0.15333    C:0.31333    A:0.21778    G:0.31556

#27: Aliivibrio_logei
position  1:    T:0.16779    C:0.16779    A:0.26846    G:0.39597
position  2:    T:0.29530    C:0.08725    A:0.43624    G:0.18121
position  3:    T:0.37584    C:0.26174    A:0.26174    G:0.10067
Average         T:0.27964    C:0.17226    A:0.32215    G:0.22595

#28: Aeromonas_veronii
position  1:    T:0.16667    C:0.21333    A:0.24000    G:0.38000
position  2:    T:0.25333    C:0.18000    A:0.36667    G:0.20000
position  3:    T:0.04000    C:0.50667    A:0.09333    G:0.36000
Average         T:0.15333    C:0.30000    A:0.23333    G:0.31333

#29: Buttiauxella_gaviniae
position  1:    T:0.15333    C:0.21333    A:0.24000    G:0.39333
position  2:    T:0.26000    C:0.16000    A:0.37333    G:0.20667
position  3:    T:0.03333    C:0.53333    A:0.05333    G:0.38000
Average         T:0.14889    C:0.30222    A:0.22222    G:0.32667

#30: Aeromonas_piscicola
position  1:    T:0.15333    C:0.22000    A:0.24000    G:0.38667
position  2:    T:0.25333    C:0.16667    A:0.37333    G:0.20667
position  3:    T:0.06667    C:0.50000    A:0.06000    G:0.37333
Average         T:0.15778    C:0.29556    A:0.22444    G:0.32222

#31: Providencia_stuartii
position  1:    T:0.15436    C:0.20805    A:0.28859    G:0.34899
position  2:    T:0.27517    C:0.12081    A:0.40940    G:0.19463
position  3:    T:0.40940    C:0.24832    A:0.22148    G:0.12081
Average         T:0.27964    C:0.19239    A:0.30649    G:0.22148

#32: Serratia_grimesii
position  1:    T:0.18121    C:0.21477    A:0.24832    G:0.35570
position  2:    T:0.29530    C:0.13423    A:0.38926    G:0.18121
position  3:    T:0.35570    C:0.20805    A:0.18792    G:0.24832
Average         T:0.27740    C:0.18568    A:0.27517    G:0.26174

#33: Hafnia_paralvei
position  1:    T:0.19463    C:0.16779    A:0.25503    G:0.38255
position  2:    T:0.27517    C:0.16107    A:0.38255    G:0.18121
position  3:    T:0.36913    C:0.18792    A:0.21477    G:0.22819
Average         T:0.27964    C:0.17226    A:0.28412    G:0.26398

#34: Buttiauxella_agrestis
position  1:    T:0.19463    C:0.17450    A:0.28859    G:0.34228
position  2:    T:0.29530    C:0.11409    A:0.40940    G:0.18121
position  3:    T:0.30201    C:0.31544    A:0.15436    G:0.22819
Average         T:0.26398    C:0.20134    A:0.28412    G:0.25056

#35: Serratia_marcescens
position  1:    T:0.14765    C:0.21477    A:0.25503    G:0.38255
position  2:    T:0.26846    C:0.14094    A:0.36242    G:0.22819
position  3:    T:0.11409    C:0.45638    A:0.09396    G:0.33557
Average         T:0.17673    C:0.27069    A:0.23714    G:0.31544

#36: Hafnia_alvei   
position  1:    T:0.19463    C:0.19463    A:0.26174    G:0.34899
position  2:    T:0.28859    C:0.15436    A:0.38255    G:0.17450
position  3:    T:0.40940    C:0.16779    A:0.16779    G:0.25503
Average         T:0.29754    C:0.17226    A:0.27069    G:0.25951

#37: Tessaracoccus_lapidicaptus
position  1:    T:0.09396    C:0.28859    A:0.17450    G:0.44295
position  2:    T:0.27517    C:0.30872    A:0.21477    G:0.20134
position  3:    T:0.05369    C:0.58389    A:0.03356    G:0.32886
Average         T:0.14094    C:0.39374    A:0.14094    G:0.32438

#38: Trueperella_pyogenes
position  1:    T:0.19595    C:0.15541    A:0.25000    G:0.39865
position  2:    T:0.28378    C:0.19595    A:0.24324    G:0.27703
position  3:    T:0.23649    C:0.33784    A:0.20946    G:0.21622
Average         T:0.23874    C:0.22973    A:0.23423    G:0.29730

#39: Gardnerella_vaginalis
position  1:    T:0.24832    C:0.14765    A:0.26174    G:0.34228
position  2:    T:0.30201    C:0.16779    A:0.32215    G:0.20805
position  3:    T:0.50336    C:0.08054    A:0.23490    G:0.18121
Average         T:0.35123    C:0.13199    A:0.27293    G:0.24385

#40: Bifidobacterium_breve
position  1:    T:0.19868    C:0.22517    A:0.17219    G:0.40397
position  2:    T:0.29801    C:0.25828    A:0.22517    G:0.21854
position  3:    T:0.16556    C:0.35099    A:0.14570    G:0.33775
Average         T:0.22075    C:0.27815    A:0.18102    G:0.32009

Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT     121 | Ser S TCT      33 | Tyr Y TAT     159 | Cys C TGT      45
      TTC     135 |       TCC      50 |       TAC     188 |       TGC      59
Leu L TTA      64 |       TCA      25 | *** * TAA       0 | *** * TGA       0
      TTG      40 |       TCG      57 |       TAG       0 | Trp W TGG      55
------------------------------------------------------------------------------
Leu L CTT      41 | Pro P CCT      14 | His H CAT      85 | Arg R CGT     114
      CTC      76 |       CCC      22 |       CAC      75 |       CGC     210
      CTA      29 |       CCA      21 | Gln Q CAA     113 |       CGA      32
      CTG     151 |       CCG      36 |       CAG     154 |       CGG      43
------------------------------------------------------------------------------
Ile I ATT     164 | Thr T ACT      45 | Asn N AAT     115 | Ser S AGT      23
      ATC     192 |       ACC     163 |       AAC     184 |       AGC      74
      ATA      21 |       ACA      29 | Lys K AAA     211 | Arg R AGA      22
Met M ATG      94 |       ACG      47 |       AAG      77 |       AGG      16
------------------------------------------------------------------------------
Val V GTT      97 | Ala A GCT      52 | Asp D GAT     200 | Gly G GGT     126
      GTC     114 |       GCC     139 |       GAC     176 |       GGC     186
      GTA      69 |       GCA      46 | Glu E GAA     329 |       GGA      52
      GTG     250 |       GCG     107 |       GAG     214 |       GGG      69
------------------------------------------------------------------------------

(Ambiguity data are not used in the counts.)


Codon position x base (3x4) table, overall

position  1:    T:0.17328    C:0.20437    A:0.24824    G:0.37412
position  2:    T:0.27866    C:0.14891    A:0.38319    G:0.18924
position  3:    T:0.24101    C:0.34336    A:0.17866    G:0.23697
Average         T:0.23098    C:0.23221    A:0.27003    G:0.26678

Codon frequencies under model, for use in evolver (TTT TTC TTA TTG ... GGG):
  0.01203981  0.01715295  0.00892491  0.01183831
  0.00643382  0.00916617  0.00476928  0.00632614
  0.01655656  0.02358790  0.00000000  0.00000000
  0.00817662  0.01164911  0.00000000  0.00803977
  0.01420020  0.02023084  0.01052637  0.01396254
  0.00758829  0.01081093  0.00562507  0.00746129
  0.01952742  0.02782045  0.01447535  0.01920060
  0.00964381  0.01373940  0.00714879  0.00948240
  0.01724811  0.02457314  0.01278573  0.01695944
  0.00921702  0.01313137  0.00683242  0.00906276
  0.02371875  0.03379178  0.01758231  0.02332179
  0.01171373  0.01668840  0.00868319  0.01151769
  0.02599478  0.03703441  0.01926949  0.02555972
  0.01389106  0.01979040  0.01029721  0.01365857
  0.03574675  0.05092789  0.02649846  0.03514847
  0.01765387  0.02515123  0.01308652  0.01735841



Nei & Gojobori 1986. dN/dS (dN, dS)
(Pairwise deletion)
(Note: This matrix is not used in later ML. analysis.
Use runmode = -2 for ML pairwise comparison.)

Escherichia_coli    
Citrobacter_amalonaticus 0.0387 (0.0445 1.1491)
Citrobacter_braakii  0.0384 (0.0430 1.1209) 0.1072 (0.0058 0.0539)
Citrobacter_freundii 0.0317 (0.0476 1.5011) 0.0740 (0.0219 0.2956) 0.0875 (0.0219 0.2502)
Citrobacter_koseri   0.0470 (0.0464 0.9864) 0.0755 (0.0665 0.8810) 0.0730 (0.0666 0.9115) 0.0656 (0.0587 0.8946)
Klebsiella_oxytoca   0.0263 (0.1404 5.3367)-1.0000 (0.1564 -1.0000)-1.0000 (0.1559 -1.0000)-1.0000 (0.1441 -1.0000)-1.0000 (0.1375 -1.0000)
Yokenella_regensburgei 0.0381 (0.1101 2.8868) 0.0499 (0.1371 2.7493) 0.0646 (0.1354 2.0946) 0.0472 (0.1132 2.3976) 0.0780 (0.1163 1.4905)-1.0000 (0.1222 -1.0000)
Enterobacter_aerogenes-1.0000 (0.1363 -1.0000)-1.0000 (0.1541 -1.0000)-1.0000 (0.1524 -1.0000)-1.0000 (0.1366 -1.0000) 0.0751 (0.1452 1.9328) 0.0232 (0.0433 1.8653) 0.0764 (0.1362 1.7822)
Klebsiella_pneumoniae-1.0000 (0.1416 -1.0000)-1.0000 (0.1523 -1.0000)-1.0000 (0.1524 -1.0000)-1.0000 (0.1366 -1.0000) 0.0764 (0.1458 1.9079) 0.0291 (0.0433 1.4907) 0.0799 (0.1380 1.7277) 0.1426 (0.0058 0.0410)
Enterobacter_lignolyticus 0.0440 (0.1500 3.4114)-1.0000 (0.1686 -1.0000)-1.0000 (0.1597 -1.0000)-1.0000 (0.1509 -1.0000) 0.0450 (0.1507 3.3503) 0.0344 (0.0714 2.0732) 0.1176 (0.1459 1.2402) 0.0738 (0.0636 0.8614) 0.0739 (0.0636 0.8607)
Trabulsiella_odontotermitis 0.0810 (0.1293 1.5961) 0.1464 (0.1606 1.0967) 0.1483 (0.1588 1.0711) 0.1082 (0.1394 1.2886) 0.1395 (0.1339 0.9600)-1.0000 (0.1370 -1.0000) 0.0863 (0.0592 0.6858) 0.0349 (0.1420 4.0668) 0.0599 (0.1473 2.4588) 0.0923 (0.1488 1.6116)
Enterobacter_hormaechei 0.1254 (0.1943 1.5489) 0.0660 (0.1962 2.9708) 0.1035 (0.1944 1.8785) 0.0914 (0.1777 1.9433) 0.1069 (0.1735 1.6223) 0.0932 (0.1579 1.6929) 0.1598 (0.1534 0.9598) 0.0930 (0.1727 1.8567) 0.0932 (0.1727 1.8535) 0.0969 (0.1675 1.7282) 0.1368 (0.1636 1.1958)
Photobacterium_gaetbulicola-1.0000 (0.3085 -1.0000)-1.0000 (0.3082 -1.0000)-1.0000 (0.2975 -1.0000)-1.0000 (0.2879 -1.0000) 0.1664 (0.2909 1.7482) 0.1131 (0.3007 2.6579) 0.1950 (0.3013 1.5453) 0.1583 (0.2989 1.8876) 0.1460 (0.2946 2.0182) 0.1725 (0.3120 1.8083) 0.2416 (0.3188 1.3194) 0.1962 (0.3222 1.6423)
Photobacterium_damselae-1.0000 (0.3339 -1.0000) 0.1244 (0.3365 2.7056) 0.1072 (0.3367 3.1405) 0.1016 (0.3314 3.2624)-1.0000 (0.3147 -1.0000)-1.0000 (0.3082 -1.0000)-1.0000 (0.3236 -1.0000)-1.0000 (0.3071 -1.0000)-1.0000 (0.3021 -1.0000)-1.0000 (0.3020 -1.0000)-1.0000 (0.3167 -1.0000)-1.0000 (0.3374 -1.0000) 0.0472 (0.1458 3.0858)
Vibrio_harveyi       0.1896 (0.3453 1.8207)-1.0000 (0.3434 -1.0000)-1.0000 (0.3330 -1.0000)-1.0000 (0.3211 -1.0000) 0.1886 (0.3207 1.7006) 0.0962 (0.3315 3.4455) 0.1760 (0.3169 1.8013)-1.0000 (0.3039 -1.0000)-1.0000 (0.3017 -1.0000)-1.0000 (0.3274 -1.0000) 0.1883 (0.3302 1.7540) 0.1832 (0.3685 2.0117) 0.0701 (0.0999 1.4258) 0.0735 (0.1340 1.8220)
Vibrio_vulnificus   -1.0000 (0.3280 -1.0000) 0.2831 (0.3261 1.1522) 0.2580 (0.3153 1.2219) 0.1943 (0.3120 1.6059) 0.1406 (0.3090 2.1973)-1.0000 (0.2780 -1.0000)-1.0000 (0.3293 -1.0000) 0.1784 (0.2737 1.5341) 0.1417 (0.2738 1.9318)-1.0000 (0.2949 -1.0000) 0.1360 (0.3254 2.3928)-1.0000 (0.3059 -1.0000) 0.1264 (0.1863 1.4747) 0.1074 (0.1966 1.8300) 0.2044 (0.2164 1.0585)
Vibrio_shilonii     -1.0000 (0.3548 -1.0000)-1.0000 (0.3636 -1.0000)-1.0000 (0.3623 -1.0000)-1.0000 (0.3458 -1.0000)-1.0000 (0.3513 -1.0000) 0.1482 (0.3383 2.2823)-1.0000 (0.3570 -1.0000)-1.0000 (0.3271 -1.0000)-1.0000 (0.3249 -1.0000)-1.0000 (0.3352 -1.0000)-1.0000 (0.3488 -1.0000)-1.0000 (0.3542 -1.0000) 0.1427 (0.2252 1.5788) 0.0629 (0.2120 3.3704)-1.0000 (0.1821 -1.0000)-1.0000 (0.2831 -1.0000)
Photobacterium_leiognathi 0.1147 (0.3310 2.8863)-1.0000 (0.3401 -1.0000)-1.0000 (0.3403 -1.0000)-1.0000 (0.3335 -1.0000) 0.1180 (0.3290 2.7885)-1.0000 (0.3190 -1.0000) 0.1073 (0.3108 2.8962) 0.1052 (0.3142 2.9866)-1.0000 (0.3120 -1.0000)-1.0000 (0.3290 -1.0000)-1.0000 (0.3338 -1.0000)-1.0000 (0.3468 -1.0000) 0.0623 (0.1941 3.1130) 0.1183 (0.2143 1.8112) 0.1494 (0.1930 1.2918) 0.1226 (0.2470 2.0154) 0.0459 (0.2617 5.7017)
Vibrio_parahaemolyticus 0.1353 (0.3344 2.4715)-1.0000 (0.3378 -1.0000)-1.0000 (0.3290 -1.0000)-1.0000 (0.3279 -1.0000) 0.1549 (0.3145 2.0306) 0.0982 (0.3208 3.2677) 0.2424 (0.3433 1.4165)-1.0000 (0.3153 -1.0000)-1.0000 (0.3132 -1.0000)-1.0000 (0.3058 -1.0000) 0.2407 (0.3595 1.4935)-1.0000 (0.3433 -1.0000) 0.1344 (0.1285 0.9564) 0.0859 (0.1078 1.2549) 0.1359 (0.0857 0.6311) 0.1896 (0.1876 0.9894)-1.0000 (0.1838 -1.0000) 0.1457 (0.1904 1.3066)
Serratia_fonticola  -1.0000 (0.3721 -1.0000) 0.1014 (0.3633 3.5847) 0.1433 (0.3542 2.4723)-1.0000 (0.3530 -1.0000)-1.0000 (0.3638 -1.0000)-1.0000 (0.3431 -1.0000) 0.1980 (0.3633 1.8352) 0.1098 (0.3299 3.0035) 0.1399 (0.3254 2.3265) 0.0535 (0.3389 6.3393) 0.3240 (0.3745 1.1559) 0.1569 (0.3708 2.3635) 0.1196 (0.1301 1.0881) 0.0701 (0.1972 2.8145) 0.0914 (0.1744 1.9086) 0.1949 (0.2539 1.3030)-1.0000 (0.3093 -1.0000) 0.1275 (0.2490 1.9532) 0.1571 (0.1938 1.2331)
Photobacterium_aphoticum-1.0000 (0.3478 -1.0000)-1.0000 (0.3466 -1.0000)-1.0000 (0.3362 -1.0000)-1.0000 (0.3351 -1.0000)-1.0000 (0.3389 -1.0000)-1.0000 (0.3322 -1.0000) 0.1981 (0.3569 1.8016) 0.0982 (0.3134 3.1910) 0.0854 (0.3112 3.6428) 0.1752 (0.3318 1.8932) 0.1293 (0.3430 2.6521)-1.0000 (0.3449 -1.0000) 0.1300 (0.1401 1.0779) 0.0719 (0.1202 1.6716) 0.0752 (0.1018 1.3544) 0.1100 (0.1943 1.7664)-1.0000 (0.2178 -1.0000) 0.1029 (0.1928 1.8727) 0.0696 (0.0985 1.4168) 0.2027 (0.2113 1.0426)
Photobacterium_angustum 0.1576 (0.3437 2.1804) 0.0810 (0.3467 4.2828) 0.0877 (0.3470 3.9583)-1.0000 (0.3394 -1.0000)-1.0000 (0.3394 -1.0000) 0.1618 (0.3211 1.9847)-1.0000 (0.3218 -1.0000)-1.0000 (0.3141 -1.0000)-1.0000 (0.3119 -1.0000)-1.0000 (0.3266 -1.0000)-1.0000 (0.3520 -1.0000)-1.0000 (0.3536 -1.0000) 0.0518 (0.1967 3.7960) 0.1456 (0.2176 1.4947) 0.1652 (0.2026 1.2263) 0.1004 (0.2404 2.3953) 0.0960 (0.2665 2.7762) 0.0594 (0.0146 0.2453) 0.1668 (0.1942 1.1644) 0.1227 (0.2484 2.0249) 0.0976 (0.2066 2.1167)
Grimontia_hollisae   0.1408 (0.3474 2.4667)-1.0000 (0.3431 -1.0000)-1.0000 (0.3343 -1.0000) 0.0810 (0.3422 4.2243) 0.1819 (0.3264 1.7947) 0.1848 (0.3325 1.7988) 0.2447 (0.3581 1.4634) 0.1346 (0.3195 2.3735) 0.1406 (0.3173 2.2572) 0.1034 (0.2968 2.8709) 0.2432 (0.3635 1.4945) 0.1878 (0.3472 1.8483) 0.1156 (0.1367 1.1825) 0.0698 (0.1264 1.8100) 0.1376 (0.1084 0.7874) 0.2008 (0.1934 0.9633) 0.0509 (0.2215 4.3505) 0.1573 (0.2050 1.3031) 0.1038 (0.0322 0.3104) 0.1370 (0.2207 1.6104) 0.0647 (0.0992 1.5341) 0.1616 (0.2102 1.3005)
Salmonella_enterica -1.0000 (0.3594 -1.0000)-1.0000 (0.3321 -1.0000)-1.0000 (0.3414 -1.0000)-1.0000 (0.3506 -1.0000)-1.0000 (0.3757 -1.0000) 0.1213 (0.3800 3.1337)-1.0000 (0.4140 -1.0000) 0.1113 (0.3770 3.3866) 0.1437 (0.3746 2.6071)-1.0000 (0.3468 -1.0000)-1.0000 (0.4074 -1.0000) 0.1591 (0.4376 2.7505)-1.0000 (0.5788 -1.0000) 0.1560 (0.5999 3.8454)-1.0000 (0.6387 -1.0000)-1.0000 (0.5783 -1.0000)-1.0000 (0.6058 -1.0000)-1.0000 (0.5858 -1.0000)-1.0000 (0.5932 -1.0000)-1.0000 (0.5452 -1.0000)-1.0000 (0.6157 -1.0000)-1.0000 (0.6087 -1.0000)-1.0000 (0.6012 -1.0000)
Morganella_morganii  0.1538 (0.4355 2.8308) 0.1602 (0.4339 2.7082) 0.1823 (0.4342 2.3816) 0.1762 (0.4420 2.5093) 0.1653 (0.4353 2.6328) 0.2268 (0.4355 1.9201) 0.2913 (0.4948 1.6988) 0.2191 (0.4410 2.0134) 0.2345 (0.4411 1.8808) 0.3071 (0.4302 1.4007) 0.2966 (0.4718 1.5909) 0.1372 (0.4547 3.3149) 0.2044 (0.4549 2.2257)-1.0000 (0.4274 -1.0000) 0.1571 (0.4446 2.8305) 0.1470 (0.4284 2.9140)-1.0000 (0.4650 -1.0000) 0.3624 (0.4794 1.3227) 0.1942 (0.4317 2.2227) 0.2428 (0.4743 1.9532) 0.2663 (0.4724 1.7738) 0.2430 (0.4724 1.9436) 0.1929 (0.4446 2.3042)-1.0000 (0.6043 -1.0000)
Aeromonas_hydrophila 0.1391 (0.4067 2.9238)-1.0000 (0.3994 -1.0000)-1.0000 (0.3882 -1.0000) 0.1538 (0.4206 2.7345) 0.2259 (0.4316 1.9109)-1.0000 (0.4335 -1.0000) 0.3104 (0.4160 1.3401) 0.2346 (0.4434 1.8904) 0.1778 (0.4461 2.5090) 0.3931 (0.4317 1.0983) 0.2274 (0.4052 1.7820) 0.2210 (0.3963 1.7927) 0.2419 (0.3554 1.4690)-1.0000 (0.3536 -1.0000) 0.1143 (0.3252 2.8445)-1.0000 (0.3878 -1.0000)-1.0000 (0.3830 -1.0000)-1.0000 (0.3937 -1.0000)-1.0000 (0.3599 -1.0000) 0.2013 (0.4306 2.1390) 0.1743 (0.3377 1.9382)-1.0000 (0.3988 -1.0000)-1.0000 (0.3706 -1.0000)-1.0000 (0.6443 -1.0000)-1.0000 (0.4566 -1.0000)
Aliivibrio_logei    -1.0000 (0.3981 -1.0000)-1.0000 (0.3743 -1.0000)-1.0000 (0.3628 -1.0000)-1.0000 (0.3616 -1.0000)-1.0000 (0.3857 -1.0000)-1.0000 (0.3552 -1.0000)-1.0000 (0.3677 -1.0000)-1.0000 (0.3534 -1.0000)-1.0000 (0.3488 -1.0000)-1.0000 (0.3456 -1.0000)-1.0000 (0.3828 -1.0000)-1.0000 (0.4101 -1.0000)-1.0000 (0.1367 -1.0000) 0.1283 (0.1882 1.4674) 0.0515 (0.1508 2.9275) 0.1333 (0.2516 1.8871)-1.0000 (0.2531 -1.0000) 0.0683 (0.2368 3.4686) 0.0963 (0.1644 1.7079) 0.1175 (0.2001 1.7027)-1.0000 (0.1800 -1.0000) 0.1154 (0.2415 2.0932) 0.0851 (0.1724 2.0248)-1.0000 (0.6140 -1.0000)-1.0000 (0.4815 -1.0000)-1.0000 (0.3673 -1.0000)
Aeromonas_veronii   -1.0000 (0.4070 -1.0000)-1.0000 (0.3948 -1.0000)-1.0000 (0.3836 -1.0000) 0.1553 (0.4159 2.6771) 0.1380 (0.4320 3.1299) 0.1774 (0.4235 2.3877) 0.3076 (0.4189 1.3617) 0.2599 (0.4333 1.6671) 0.2105 (0.4360 2.0708) 0.3567 (0.4217 1.1824) 0.2054 (0.3980 1.9375) 0.1833 (0.3843 2.0966) 0.2154 (0.3464 1.6082)-1.0000 (0.3389 -1.0000) 0.1563 (0.3288 2.1041)-1.0000 (0.3724 -1.0000)-1.0000 (0.3857 -1.0000)-1.0000 (0.3818 -1.0000)-1.0000 (0.3555 -1.0000) 0.1661 (0.4207 2.5324) 0.1339 (0.3290 2.4569)-1.0000 (0.3820 -1.0000) 0.1015 (0.3661 3.6070)-1.0000 (0.6520 -1.0000)-1.0000 (0.4408 -1.0000) 0.0928 (0.0177 0.1907)-1.0000 (0.3675 -1.0000)
Buttiauxella_gaviniae 0.1568 (0.4156 2.6506)-1.0000 (0.3933 -1.0000)-1.0000 (0.3822 -1.0000)-1.0000 (0.4143 -1.0000) 0.2191 (0.4299 1.9623)-1.0000 (0.4211 -1.0000) 0.3363 (0.4080 1.2132) 0.2694 (0.4325 1.6053) 0.2209 (0.4352 1.9699) 0.4254 (0.4322 1.0159) 0.2657 (0.3973 1.4951) 0.2378 (0.3898 1.6387) 0.2390 (0.3548 1.4844)-1.0000 (0.3398 -1.0000) 0.1402 (0.3325 2.3720)-1.0000 (0.3810 -1.0000)-1.0000 (0.3771 -1.0000)-1.0000 (0.3836 -1.0000)-1.0000 (0.3488 -1.0000) 0.2057 (0.4234 2.0578) 0.1793 (0.3322 1.8529)-1.0000 (0.3886 -1.0000)-1.0000 (0.3601 -1.0000)-1.0000 (0.6506 -1.0000)-1.0000 (0.4445 -1.0000) 0.2028 (0.0282 0.1389)-1.0000 (0.3701 -1.0000) 0.1197 (0.0222 0.1852)
Aeromonas_piscicola -1.0000 (0.4272 -1.0000)-1.0000 (0.4046 -1.0000)-1.0000 (0.3933 -1.0000) 0.0811 (0.4260 5.2528)-1.0000 (0.4357 -1.0000)-1.0000 (0.4337 -1.0000) 0.3481 (0.4188 1.2030) 0.2939 (0.4436 1.5097) 0.2454 (0.4464 1.8188) 0.3725 (0.4503 1.2088) 0.2498 (0.4079 1.6327) 0.2411 (0.3903 1.6189) 0.2198 (0.3591 1.6335)-1.0000 (0.3410 -1.0000)-1.0000 (0.3321 -1.0000)-1.0000 (0.3831 -1.0000)-1.0000 (0.3929 -1.0000)-1.0000 (0.3972 -1.0000)-1.0000 (0.3601 -1.0000) 0.1890 (0.4360 2.3065) 0.2089 (0.3341 1.5992)-1.0000 (0.4023 -1.0000)-1.0000 (0.3660 -1.0000)-1.0000 (0.6671 -1.0000)-1.0000 (0.4578 -1.0000) 0.0776 (0.0184 0.2376)-1.0000 (0.3817 -1.0000) 0.0858 (0.0214 0.2500) 0.0768 (0.0147 0.1913)
Providencia_stuartii-1.0000 (0.3967 -1.0000) 0.1707 (0.4176 2.4456) 0.1953 (0.4280 2.1914)-1.0000 (0.4141 -1.0000) 0.1387 (0.3968 2.8600)-1.0000 (0.3419 -1.0000)-1.0000 (0.3894 -1.0000)-1.0000 (0.3378 -1.0000)-1.0000 (0.3378 -1.0000)-1.0000 (0.3893 -1.0000) 0.0846 (0.3878 4.5819)-1.0000 (0.3709 -1.0000)-1.0000 (0.3334 -1.0000) 0.0983 (0.3426 3.4851)-1.0000 (0.3082 -1.0000)-1.0000 (0.3069 -1.0000)-1.0000 (0.3306 -1.0000) 0.0946 (0.3666 3.8772)-1.0000 (0.3059 -1.0000)-1.0000 (0.2939 -1.0000)-1.0000 (0.3287 -1.0000) 0.1711 (0.3633 2.1229)-1.0000 (0.3349 -1.0000) 0.3012 (0.6289 2.0882)-1.0000 (0.4533 -1.0000)-1.0000 (0.4936 -1.0000)-1.0000 (0.3594 -1.0000)-1.0000 (0.4693 -1.0000)-1.0000 (0.4830 -1.0000)-1.0000 (0.4897 -1.0000)
Serratia_grimesii   -1.0000 (0.3882 -1.0000)-1.0000 (0.3693 -1.0000)-1.0000 (0.3625 -1.0000) 0.1008 (0.3936 3.9058) 0.1151 (0.4246 3.6875) 0.1725 (0.4005 2.3218) 0.2204 (0.3923 1.7802) 0.1796 (0.4280 2.3828) 0.1351 (0.4230 3.1310)-1.0000 (0.4529 -1.0000) 0.2293 (0.4268 1.8613) 0.1945 (0.3882 1.9957)-1.0000 (0.3726 -1.0000)-1.0000 (0.3991 -1.0000)-1.0000 (0.3455 -1.0000)-1.0000 (0.3871 -1.0000)-1.0000 (0.3662 -1.0000) 0.0978 (0.3978 4.0669)-1.0000 (0.3464 -1.0000)-1.0000 (0.4385 -1.0000)-1.0000 (0.3747 -1.0000)-1.0000 (0.3963 -1.0000)-1.0000 (0.3592 -1.0000) 0.3231 (0.6950 2.1511)-1.0000 (0.4029 -1.0000)-1.0000 (0.4416 -1.0000) 0.2229 (0.4084 1.8323)-1.0000 (0.4146 -1.0000)-1.0000 (0.4039 -1.0000)-1.0000 (0.4221 -1.0000) 0.0737 (0.3759 5.1019)
Hafnia_paralvei     -1.0000 (0.4226 -1.0000)-1.0000 (0.4287 -1.0000)-1.0000 (0.4188 -1.0000)-1.0000 (0.4341 -1.0000)-1.0000 (0.4370 -1.0000)-1.0000 (0.4286 -1.0000)-1.0000 (0.4540 -1.0000)-1.0000 (0.4301 -1.0000)-1.0000 (0.4328 -1.0000)-1.0000 (0.4436 -1.0000)-1.0000 (0.4494 -1.0000)-1.0000 (0.3837 -1.0000)-1.0000 (0.3818 -1.0000)-1.0000 (0.3671 -1.0000)-1.0000 (0.3466 -1.0000)-1.0000 (0.3649 -1.0000)-1.0000 (0.3709 -1.0000)-1.0000 (0.3983 -1.0000)-1.0000 (0.3571 -1.0000)-1.0000 (0.4504 -1.0000)-1.0000 (0.3955 -1.0000) 0.1329 (0.4083 3.0725)-1.0000 (0.3876 -1.0000)-1.0000 (0.7018 -1.0000) 0.1057 (0.3921 3.7095)-1.0000 (0.3789 -1.0000) 0.1295 (0.4159 3.2118)-1.0000 (0.3657 -1.0000)-1.0000 (0.3639 -1.0000)-1.0000 (0.3799 -1.0000)-1.0000 (0.3992 -1.0000)-1.0000 (0.2577 -1.0000)
Buttiauxella_agrestis-1.0000 (0.4329 -1.0000)-1.0000 (0.4494 -1.0000)-1.0000 (0.4376 -1.0000)-1.0000 (0.4497 -1.0000)-1.0000 (0.4510 -1.0000)-1.0000 (0.4194 -1.0000)-1.0000 (0.4310 -1.0000)-1.0000 (0.4264 -1.0000)-1.0000 (0.4240 -1.0000)-1.0000 (0.4537 -1.0000)-1.0000 (0.4299 -1.0000)-1.0000 (0.4275 -1.0000)-1.0000 (0.3818 -1.0000)-1.0000 (0.3715 -1.0000) 0.1032 (0.3416 3.3093)-1.0000 (0.3361 -1.0000)-1.0000 (0.3843 -1.0000)-1.0000 (0.4343 -1.0000)-1.0000 (0.3350 -1.0000)-1.0000 (0.4368 -1.0000)-1.0000 (0.3666 -1.0000)-1.0000 (0.4437 -1.0000)-1.0000 (0.3467 -1.0000) 0.2992 (0.6677 2.2314) 0.2357 (0.4243 1.8001)-1.0000 (0.4308 -1.0000) 0.0947 (0.4033 4.2603)-1.0000 (0.4269 -1.0000)-1.0000 (0.4103 -1.0000)-1.0000 (0.4175 -1.0000) 0.1566 (0.3759 2.4004) 0.0998 (0.2406 2.4118) 0.1369 (0.2081 1.5196)
Serratia_marcescens -1.0000 (0.4218 -1.0000)-1.0000 (0.4194 -1.0000)-1.0000 (0.4071 -1.0000)-1.0000 (0.4403 -1.0000) 0.1511 (0.4424 2.9284) 0.1933 (0.3748 1.9385) 0.3254 (0.4219 1.2967) 0.2334 (0.3862 1.6546) 0.2309 (0.3814 1.6522) 0.4102 (0.4294 1.0468) 0.2580 (0.4420 1.7135) 0.1819 (0.3865 2.1243) 0.2633 (0.3902 1.4820)-1.0000 (0.4518 -1.0000) 0.1502 (0.4011 2.6700)-1.0000 (0.3782 -1.0000)-1.0000 (0.4251 -1.0000)-1.0000 (0.4297 -1.0000)-1.0000 (0.3738 -1.0000)-1.0000 (0.4675 -1.0000) 0.2071 (0.4316 2.0846)-1.0000 (0.4251 -1.0000) 0.1526 (0.3839 2.5156) 0.2461 (0.6619 2.6894)-1.0000 (0.4203 -1.0000) 0.3681 (0.3849 1.0457)-1.0000 (0.4629 -1.0000) 0.3460 (0.3715 1.0737) 0.3048 (0.3709 1.2170) 0.2974 (0.3867 1.3002)-1.0000 (0.3988 -1.0000) 0.0619 (0.1471 2.3748)-1.0000 (0.2799 -1.0000) 0.1156 (0.3004 2.5989)
Hafnia_alvei        -1.0000 (0.4380 -1.0000)-1.0000 (0.4740 -1.0000)-1.0000 (0.4635 -1.0000)-1.0000 (0.4798 -1.0000)-1.0000 (0.4640 -1.0000)-1.0000 (0.4441 -1.0000)-1.0000 (0.4881 -1.0000)-1.0000 (0.4502 -1.0000)-1.0000 (0.4476 -1.0000)-1.0000 (0.4943 -1.0000)-1.0000 (0.4792 -1.0000)-1.0000 (0.4338 -1.0000)-1.0000 (0.4357 -1.0000)-1.0000 (0.3764 -1.0000)-1.0000 (0.3702 -1.0000)-1.0000 (0.3979 -1.0000)-1.0000 (0.4111 -1.0000)-1.0000 (0.4481 -1.0000)-1.0000 (0.3593 -1.0000)-1.0000 (0.4663 -1.0000)-1.0000 (0.3905 -1.0000)-1.0000 (0.4654 -1.0000)-1.0000 (0.3731 -1.0000) 0.5154 (0.7520 1.4591) 0.1638 (0.3805 2.3224)-1.0000 (0.4602 -1.0000)-1.0000 (0.4729 -1.0000)-1.0000 (0.4468 -1.0000)-1.0000 (0.4330 -1.0000)-1.0000 (0.4441 -1.0000) 0.1729 (0.4044 2.3395) 0.1483 (0.2467 1.6630) 0.1207 (0.2232 1.8484) 0.1152 (0.1769 1.5359)-1.0000 (0.3365 -1.0000)
Tessaracoccus_lapidicaptus-1.0000 (0.6827 -1.0000)-1.0000 (0.6945 -1.0000)-1.0000 (0.6913 -1.0000)-1.0000 (0.7116 -1.0000)-1.0000 (0.7141 -1.0000)-1.0000 (0.7371 -1.0000) 0.4437 (0.7213 1.6259) 0.4873 (0.7342 1.5067) 0.4798 (0.7384 1.5391) 0.7403 (0.8321 1.1241)-1.0000 (0.7020 -1.0000)-1.0000 (0.8054 -1.0000) 0.6143 (0.7731 1.2586)-1.0000 (0.8500 -1.0000) 0.1795 (0.7939 4.4230) 0.3208 (0.8113 2.5292) 0.2793 (0.7732 2.7679)-1.0000 (0.8127 -1.0000) 0.3569 (0.8294 2.3236) 0.4940 (0.8197 1.6592) 0.5836 (0.7737 1.3258)-1.0000 (0.8066 -1.0000) 0.3984 (0.8400 2.1084)-1.0000 (1.0416 -1.0000)-1.0000 (0.6616 -1.0000) 1.1412 (0.7098 0.6220)-1.0000 (0.8328 -1.0000) 1.0080 (0.6991 0.6935) 1.1404 (0.6925 0.6072) 1.0847 (0.7181 0.6620)-1.0000 (0.7087 -1.0000)-1.0000 (0.7692 -1.0000)-1.0000 (0.7893 -1.0000)-1.0000 (0.8223 -1.0000) 0.3796 (0.6969 1.8358)-1.0000 (0.7461 -1.0000)
Trueperella_pyogenes-1.0000 (0.7280 -1.0000)-1.0000 (0.7598 -1.0000)-1.0000 (0.7660 -1.0000) 0.1915 (0.7311 3.8170)-1.0000 (0.7513 -1.0000) 0.3427 (0.7505 2.1902) 0.3574 (0.6990 1.9561)-1.0000 (0.7121 -1.0000) 0.2476 (0.7129 2.8795)-1.0000 (0.7654 -1.0000) 0.2385 (0.7165 3.0036) 0.1596 (0.6647 4.1652) 0.3938 (0.7111 1.8058)-1.0000 (0.6626 -1.0000)-1.0000 (0.7181 -1.0000)-1.0000 (0.7408 -1.0000)-1.0000 (0.7932 -1.0000)-1.0000 (0.7663 -1.0000)-1.0000 (0.7216 -1.0000)-1.0000 (0.7461 -1.0000)-1.0000 (0.7126 -1.0000)-1.0000 (0.7674 -1.0000)-1.0000 (0.7216 -1.0000)-1.0000 (0.8743 -1.0000)-1.0000 (0.8658 -1.0000)-1.0000 (0.7745 -1.0000)-1.0000 (0.7000 -1.0000)-1.0000 (0.7506 -1.0000)-1.0000 (0.7681 -1.0000) 0.2232 (0.7750 3.4725)-1.0000 (0.6944 -1.0000)-1.0000 (0.8181 -1.0000)-1.0000 (0.7279 -1.0000)-1.0000 (0.7418 -1.0000)-1.0000 (0.7995 -1.0000)-1.0000 (0.7644 -1.0000)-1.0000 (0.7442 -1.0000)
Gardnerella_vaginalis-1.0000 (0.6945 -1.0000)-1.0000 (0.7415 -1.0000)-1.0000 (0.7255 -1.0000)-1.0000 (0.7030 -1.0000)-1.0000 (0.6974 -1.0000) 0.1508 (0.6615 4.3869)-1.0000 (0.6621 -1.0000)-1.0000 (0.6583 -1.0000)-1.0000 (0.6514 -1.0000)-1.0000 (0.6961 -1.0000)-1.0000 (0.7108 -1.0000)-1.0000 (0.7554 -1.0000)-1.0000 (0.7998 -1.0000) 0.2438 (0.8172 3.3519) 0.2805 (0.7798 2.7795)-1.0000 (0.8372 -1.0000)-1.0000 (0.7714 -1.0000) 0.2456 (0.7831 3.1885)-1.0000 (0.8150 -1.0000)-1.0000 (0.7767 -1.0000)-1.0000 (0.8068 -1.0000) 0.2353 (0.8072 3.4307)-1.0000 (0.8223 -1.0000)-1.0000 (0.9572 -1.0000) 0.2809 (0.8115 2.8889)-1.0000 (0.8923 -1.0000) 0.2729 (0.7923 2.9031)-1.0000 (0.9194 -1.0000)-1.0000 (0.9008 -1.0000)-1.0000 (0.9190 -1.0000) 0.3557 (0.7228 2.0321) 0.3893 (0.8534 2.1922) 0.3679 (0.7721 2.0987)-1.0000 (0.7573 -1.0000)-1.0000 (0.8458 -1.0000) 0.5271 (0.7792 1.4783)-1.0000 (0.6570 -1.0000)-1.0000 (0.8110 -1.0000)
Bifidobacterium_breve 0.3731 (0.7412 1.9865)-1.0000 (0.8043 -1.0000) 0.1648 (0.7964 4.8337) 0.3448 (0.7630 2.2130) 0.3117 (0.7438 2.3861) 0.4181 (0.7598 1.8173) 0.3833 (0.7703 2.0099) 0.5933 (0.7001 1.1800) 0.6541 (0.7155 1.0940) 0.4769 (0.7238 1.5179) 0.4303 (0.7211 1.6756) 0.5785 (0.8185 1.4148) 0.5223 (0.8263 1.5820) 0.3529 (0.7591 2.1509) 0.4232 (0.7750 1.8314) 0.4613 (0.7961 1.7256) 0.2035 (0.8451 4.1535) 0.3067 (0.8383 2.7332) 0.4942 (0.7517 1.5210) 0.5908 (0.8239 1.3944) 0.3570 (0.7918 2.2184) 0.3092 (0.8402 2.7178) 0.5587 (0.7693 1.3770) 0.4040 (1.0235 2.5335) 0.4155 (0.8105 1.9509) 0.3800 (0.7974 2.0986)-1.0000 (0.8749 -1.0000) 0.3819 (0.7976 2.0884) 0.3472 (0.8198 2.3612) 0.3165 (0.8038 2.5392)-1.0000 (0.7353 -1.0000) 0.3353 (0.8886 2.6503)-1.0000 (0.8269 -1.0000)-1.0000 (0.8440 -1.0000) 0.3859 (0.8477 2.1965)-1.0000 (0.8400 -1.0000) 0.3187 (0.6629 2.0800) 0.4040 (0.8018 1.9846)-1.0000 (0.6881 -1.0000)
